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NCBI: 03-AUG-2016
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus NCTC8325
- locus tag: SAOUHSC_01656
- pan locus tag?: SAUPAN004136000
- symbol: SAOUHSC_01656
- pan gene symbol?: znuB
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAOUHSC_01656
- symbol: SAOUHSC_01656
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1568411..1569274
- length: 864
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3920107 NCBI
- RefSeq: YP_500167 NCBI
- BioCyc: G1I0R-1539 BioCyc
- MicrobesOnline: 1290081 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841TTGATAGATGCATTATTGAATTTTGATTTTATGAGGTACTCTTTAATTAGTGGTATCTTG
ATAGGTTTTATTGCGCCTCTAATCGGTGCTTTTATCGTTGTTAGACGACTATCACTTATA
GCTGATGCTCTAAGTCATGTAACTTTAGGTGGTATATCTTTCGGTATGTTTTTACTTACT
ATTATGCCAACACTAGTATTTATTAATCCAATGTGGTTTGGAATCTTATTCGCAATAGTA
GGTGCGCTTCTAATTGAAAAATTAAGAACGTCATACACTGCTTACCAAGAAATTGCTATT
CCAATTATAATGAGTGCTGGTATCGCCTTGAGTGCAATCTTCATTTCATTAGCTGATGGG
TTCAATCAAGAAATTGTTGGATTGCTATTTGGCTCAATAAGCGCAGTGAATATAAGTGAT
TTAACAACGATTATTGTCATTGCCATCATAGTTGTTCTGTTTATTACATTGTTTTATAAA
GAATTATTTATATTGTCATTTGATGAGGAATATAGTAAAGTCATTGGCATTCCTAAATGG
ATTCAATTTTTATTTATTGTTATTGTAGCGATGGTTATTTCTGCCTCAATGCGTGTTGTA
GGGATACTGTTAGTAAGTGCGTTAATCACGTTACCAATTGCAATAAGTATGCGAATAACA
AAAAGTTTTAAGCAATTGATATTACTAAGTGTATTTTTAGGTGAATTATCAGTAATATTA
GGCTTAGTCCTAGCTTTCTATATGGACATTTCTCCGGGTGGTGTAATTGTAGTTCTACTT
GTTATTTTACTTATGATTACAATGGCTTATCAGAAAATGCGAATGAAGTTTAAAAAGGGA
GCTAATATCAATGAATACAAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAOUHSC_01656
- symbol: SAOUHSC_01656
- description: hypothetical protein
- length: 287
- theoretical pI: 9.49416
- theoretical MW: 31606.5
- GRAVY: 1.33728
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, permease subunit (TIGR03770; HMM-score: 89.6)and 1 moreYhgE/Pip N-terminal domain (TIGR03061; HMM-score: 13.4)
- TheSEED :
- Zinc ABC transporter, permease protein ZnuB
- PFAM: Membrane_trans (CL0142) ABC-3; ABC 3 transport family (PF00950; HMM-score: 193.1)and 1 moreFecCD; FecCD transport family (PF01032; HMM-score: 43.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 9
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9998
- Cell wall & surface Score: 0
- Extracellular Score: 0.0002
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002991
- TAT(Tat/SPI): 0.000453
- LIPO(Sec/SPII): 0.003674
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIDALLNFDFMRYSLISGILIGFIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFLLTIMPTLVFINPMWFGILFAIVGALLIEKLRTSYTAYQEIAIPIIMSAGIALSAIFISLADGFNQEIVGLLFGSISAVNISDLTTIIVIAIIVVLFITLFYKELFILSFDEEYSKVIGIPKWIQFLFIVIVAMVISASMRVVGILLVSALITLPIAISMRITKSFKQLILLSVFLGELSVILGLVLAFYMDISPGGVIVVLLVILLMITMAYQKMRMKFKKGANINEYK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SAOUHSC_01655 < SAOUHSC_01656 < SAOUHSC_01657 < SAOUHSC_01658 < SAOUHSC_01659predicted SigA promoter [1] : SAOUHSC_01655 < SAOUHSC_01656 < SAOUHSC_01657 < S654 < SAOUHSC_01658 < SAOUHSC_01659predicted SigA promoter [1] : SAOUHSC_01655 < SAOUHSC_01656 < SAOUHSC_01657 < S654 < SAOUHSC_01658 < SAOUHSC_01659 < S655 < SAOUHSC_01660 < SAOUHSC_01661 < SAOUHSC_01662 < S656 < SAOUHSC_01663
⊟Regulation[edit | edit source]
- regulator: Zur* (repression) regulon
Zur* (TF) important in Zinc homeostasis; RegPrecise transcription unit transferred from N315 data RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: [1]
Multi-gene expression profiles
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ 1.0 1.1 1.2 1.3 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
PLoS Genet: 2016, 12(4);e1005962
[PubMed:27035918] [WorldCat.org] [DOI] (I e)