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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1612 [new locus tag: SACOL_RS08220 ]
  • pan locus tag?: SAUPAN004136000
  • symbol: SACOL1612
  • pan gene symbol?: znuB
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1612 [new locus tag: SACOL_RS08220 ]
  • symbol: SACOL1612
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1642372..1643235
  • length: 864
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    TTGATAGATGCATTATTGAATTTTGATTTTATGAGGTACTCTTTAATTAGTGGTATCTTG
    ATAGGTTTTATTGCGCCTCTAATCGGTGCTTTTATCGTTGTTAGACGACTATCACTTATA
    GCTGATGCTCTAAGTCATGTAACTTTAGGTGGTATATCTTTCGGTATGTTTTTACTTACT
    ATTATGCCAACACTAGTATTTATTAATCCAATGTGGTTTGGAATCTTATTCGCAATAGTA
    GGTGCGCTTCTAATTGAAAAATTAAGAACGTCATACACTGCTTACCAAGAAATTGCTATT
    CCAATTATAATGAGTGCTGGTATCGCCTTGAGTGCAATCTTCATTTCATTAGCTGATGGG
    TTCAATCAAGAAATTGTTGGATTGCTATTTGGCTCAATAAGCGCAGTGAATATAAGTGAT
    TTAACAACGATTATTGTCATTGCCATCATAGTTGTTCTGTTTATTACATTGTTTTATAAA
    GAATTATTTATATTGTCATTTGATGAGGAATATAGTAAAGTCATTGGCATTCCTAAATGG
    ATTCAATTTTTATTTATTGTTATTGTAGCGATGGTTATTTCTGCCTCAATGCGTGTTGTA
    GGGATACTGTTAGTAAGTGCGTTAATCACGTTACCAATTGCAATAAGTATGCGAATAACA
    AAAAGTTTTAAGCAATTGATATTACTAAGTGTATTTTTAGGTGAATTATCAGTAATATTA
    GGCTTAGTCCTAGCTTTCTATATGGACATTTCTCCGGGTGGTGTAATTGTAGTTCTACTT
    GTTATTTTACTTATGATTACAATGGCTTATCAGAAAATGCGAATGAAGTTTAAAAAGGGA
    GCTAATATCAATGAATACAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    864

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1612 [new locus tag: SACOL_RS08220 ]
  • symbol: SACOL1612
  • description: ABC transporter permease
  • length: 287
  • theoretical pI: 9.49416
  • theoretical MW: 31606.5
  • GRAVY: 1.33728

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, permease subunit (TIGR03770; HMM-score: 89.6)
    and 1 more
    YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 13.4)
  • TheSEED  :
    • Zinc ABC transporter, permease protein ZnuB
  • PFAM:
    Membrane_trans (CL0142) ABC-3; ABC 3 transport family (PF00950; HMM-score: 192.7)
    and 1 more
    FecCD; FecCD transport family (PF01032; HMM-score: 41.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002991
    • TAT(Tat/SPI): 0.000453
    • LIPO(Sec/SPII): 0.003674
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIDALLNFDFMRYSLISGILIGFIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFLLTIMPTLVFINPMWFGILFAIVGALLIEKLRTSYTAYQEIAIPIIMSAGIALSAIFISLADGFNQEIVGLLFGSISAVNISDLTTIIVIAIIVVLFITLFYKELFILSFDEEYSKVIGIPKWIQFLFIVIVAMVISASMRVVGILLVSALITLPIAISMRITKSFKQLILLSVFLGELSVILGLVLAFYMDISPGGVIVVLLVILLMITMAYQKMRMKFKKGANINEYK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: Integral membrane [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: Zur* (repression) regulon
    Zur*(TF)important in Zinc homeostasis; RegPrecise    transcription unit transferred from N315 data RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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