From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2108 [new locus tag: SACOL_RS11030 ]
  • pan locus tag?: SAUPAN005407000
  • symbol: SACOL2108
  • pan gene symbol?: —
  • synonym:
  • product: Sua5/YciO/YrdC/YwlC family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2108 [new locus tag: SACOL_RS11030 ]
  • symbol: SACOL2108
  • product: Sua5/YciO/YrdC/YwlC family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2167902..2168957
  • length: 1056
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    GTGATTAAGTTGGATACTAAAATTTGGGATGTTAGAGAATATAATGAAGATTTACAGCAA
    TATCCTAAAATTAATGAAATAAAAGACATTGTTTTAAACGGTGGTTTAATAGGTTTACCA
    ACTGAAACAGTTTATGGACTTGCAGCAAATGCGACAGATGAAGAAGCTGTAGCTAAAATA
    TATGAAGCTAAAGGCCGTCCATCTGACAATCCGCTTATTGTTCATATACACAGTAAAGGT
    CAATTAAAAGATTTTACATATACTTTGGATCCACGCGTAGAAAAGTTAATGCAGGCATTC
    TGGCCGGGCCCTATTTCGTTTATATTGCCGTTAAAGCTAGGCTATCTATGTCGAAAAGTT
    TCTGGAGGTTTATCATCAGTTGCTGTTAGAATGCCAAGCCATTCTGTAGGTAGACAATTA
    TTACAAATCATAAATGAACCTCTAGCTGCTCCAAGTGCTAATTTAAGTGGTAGACCTTCA
    CCAACAACTTTCAATCATGTATATCAAGATTTGAATGGCCGTATCGATGGTATTGTTCAA
    GCTGAACAAAGTGAAGAAGGATTAGAAAGTACGGTTTTAGATTGCACATCTTTTCCTTAT
    AAAATTGCAAGACCTGGTTCTATAACAGCAGCAATGATTACAGAAATACTTCCGAATAGT
    ATCGCCCATGCTGATTATAATGATACTGAACAGCCAATTGCACCAGGTATGAAGTATAAG
    CATTACTCACCCAATACACCACTTACAATTATTACAGATATTGAGAGCAAAATTGGAAAT
    GACGGTAAAGATTGGTCTTCTATAGCTTTTATTGTGCCGAGTAATAAGGTGGCGTTTATA
    CCAAGTGAAGCGCAATTCATTCAATTATGTCAGGATGACAATGATGTTAAACAAGCAAGT
    CATAATCTTTATGATGTGTTACATTCACTTGATGAAAATGAAAATATTTCAGCGGCGTAT
    ATATACGGCTTTGAGCTGAATGATAATACAGAAGCAATTATGAATCGCATGTTAAAAGCT
    GCAGGTAATCACATTATTAAAGGATGTGAACTATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1056

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2108 [new locus tag: SACOL_RS11030 ]
  • symbol: SACOL2108
  • description: Sua5/YciO/YrdC/YwlC family protein
  • length: 351
  • theoretical pI: 4.88491
  • theoretical MW: 38799.8
  • GRAVY: -0.254416

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.7.87?  ExPASy
    L-threonylcarbamoyladenylate synthase L-threonine + ATP + HCO3(-) = L-threonylcarbamoyladenylate + diphosphate + H2O
  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family (TIGR00057; HMM-score: 194.4)
    and 1 more
    Genetic information processing Protein fate Protein modification and repair carbamoyltransferase HypF (TIGR00143; HMM-score: 27.4)
  • TheSEED  :
    • TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
    RNA Metabolism RNA processing and modification YrdC-YciO  TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
    and 1 more
    RNA Metabolism RNA processing and modification YrdC-YciO-Sua5 and associated protein families  TsaC protein (YrdC-Sua5 domains) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
  • PFAM:
    no clan defined Sua5_yciO_yrdC; Telomere recombination (PF01300; HMM-score: 179.4)
    and 1 more
    GT-B (CL0113) SUA5; Putative GTP-binding controlling metal-binding (PF03481; HMM-score: 76.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029813
    • TAT(Tat/SPI): 0.004212
    • LIPO(Sec/SPII): 0.000438
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIKLDTKIWDVREYNEDLQQYPKINEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLDPRVEKLMQAFWPGPISFILPLKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQIINEPLAAPSANLSGRPSPTTFNHVYQDLNGRIDGIVQAEQSEEGLESTVLDCTSFPYKIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGNDGKDWSSIAFIVPSNKVAFIPSEAQFIQLCQDDNDVKQASHNLYDVLHSLDENENISAAYIYGFELNDNTEAIMNRMLKAAGNHIIKGCEL

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1] [2] [3]
  • quantitative data / protein copy number per cell: 91 [4]
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  3. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)
  4. ↑ Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
    Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
    Sci Rep: 2016, 6;28172
    [PubMed:27344979] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SACOL2108&oldid=100249"