From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
  • pan locus tag?: SAUPAN003923000
  • symbol: NWMN_RS07735
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
  • symbol: NWMN_RS07735
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1539606..1540709
  • length: 1104
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1539606..1540709) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1374

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGCCACAAGGTTTGGAAGTATTCCGCGTGTTATATCACAAATATCCAGACGAAAGTGAA
    TTGCTGATTTATTTTATTGAAGGTTTAATGTCTGAAAATCAAACTGACGAAGCGTTAGAA
    TATTTAAGTTATGTTGAACCATCACCTGAAAAGTTGATGTTAGAAGCAGATTTATATCAA
    CAAATTAATATGATGGAAGTTGCTATTGATAAATTACAAGAAGCACTTGAACTAGAGCCA
    AATGATCCAATAATCCATTTTGCATTGGCTGAAATGTTATATTATGATGGTCAATATTTA
    CGTGCTACCTCTGAATACGAAACCGTTTTAGAAACTGGTGAATATCAAGTTAATGGTGTA
    AACTTATTCTCTCGTATGGCAGATTGTAGTTTACAAAGTGGTAACTATAGTGATGCGATT
    CGCTTATACGATGAAATTAATGAAGATGAAATGACTTCAGAAGATTATCTCAAAAAAGCC
    ATTTCTTACGATAAAAATGACATCACTCAAGAAGCAATTAAAATAATGACTACATTACTT
    TCTAAAGATCCTGATTATATTCAAGGCTACTTGTATTTACAATCATTATATGAAAATGAA
    AAAAATTATCCAGATGCCATTGAAACGGGTAAAGAAGGATTACGACTAAGTCAATTTTAT
    AAAGAGTTAATGTATACAACTGGATGTTTGGAAATAGAACACGGCGATGCTAATGAAGGT
    GTATTATTGTTAAAACAAGCATTAGAGGTTGATAATGCTTACCAAGAACCTTTATTGATT
    TTAAGCGATTTATATCGTAATGAAGAAGATTATGAAGCAATCATTGAATTATTAACATAT
    GTAGATGAAGAAGATTTGGATCCTACATTCATGTGGCATTTAGCGTTCGCCTATGGTCAA
    GAAGAGCGAGATAAAGAAGCTCAACATTTCTTTGAATTAGCATATCCAACGATGAAAACA
    AATATTGATTTTATGAGTGATTATTATTTCTATTTAATTGAAATTGGTCAAAAGGAACAA
    GCAATTACTATTTTAAATCAATTGTTGGAACTAGAGCCAAGTAACGAAAATTGGCATGAC
    GAATTATCAAGATTGCAATCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1104

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS07735 [old locus tag: NWMN_1374 ]
  • symbol: NWMN_RS07735
  • description: hypothetical protein
  • length: 367
  • theoretical pI: 3.81747
  • theoretical MW: 43020.7
  • GRAVY: -0.46921

⊟Function[edit | edit source]

  • TIGRFAM:
    putative PEP-CTERM system TPR-repeat lipoprotein (TIGR02917; HMM-score: 73.4)
    and 7 more
    type IV pilus biogenesis/stability protein PilW (TIGR02521; HMM-score: 46.3)
    type III secretion low calcium response chaperone LcrH/SycD (TIGR02552; HMM-score: 34.5)
    poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA (TIGR03939; HMM-score: 20.5)
    Unknown function General heme biosynthesis-associated TPR protein (TIGR00540; HMM-score: 19.6)
    tol-pal system protein YbgF (TIGR02795; HMM-score: 19.1)
    pentatricopeptide repeat domain (TIGR00756; HMM-score: 13.7)
    FimV C-terminal domain (TIGR03504; HMM-score: 11.9)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    TPR (CL0020) TPR_19; Tetratricopeptide repeat (PF14559; HMM-score: 78.9)
    TPR_2; Tetratricopeptide repeat (PF07719; HMM-score: 67.1)
    and 19 more
    TPR_14; Tetratricopeptide repeat (PF13428; HMM-score: 41.1)
    TPR_16; Tetratricopeptide repeat (PF13432; HMM-score: 36.2)
    TPR_7; Tetratricopeptide repeat (PF13176; HMM-score: 34.2)
    TPR_11; TPR repeat (PF13414; HMM-score: 33.1)
    TPR_6; Tetratricopeptide repeat (PF13174; HMM-score: 32.4)
    TPR_15; Tetratricopeptide repeat (PF13429; HMM-score: 31.5)
    TPR_12; Tetratricopeptide repeat (PF13424; HMM-score: 28.9)
    ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3 (PF12895; HMM-score: 26.2)
    TPR_8; Tetratricopeptide repeat (PF13181; HMM-score: 26.2)
    BTAD; Bacterial transcriptional activator domain (PF03704; HMM-score: 24.7)
    TPR_20; Tetratricopeptide repeat (PF14561; HMM-score: 22.2)
    TPR_9; Tetratricopeptide repeat (PF13371; HMM-score: 20.9)
    TPR_1; Tetratricopeptide repeat (PF00515; HMM-score: 20.1)
    TPR_17; Tetratricopeptide repeat (PF13431; HMM-score: 19)
    SGNH_hydrolase (CL0264) DUF4886; Domain of unknown function (DUF4886) (PF16227; HMM-score: 16.3)
    TPR (CL0020) SNAP; Soluble NSF attachment protein, SNAP (PF14938; HMM-score: 15.4)
    no clan defined MIT; MIT (microtubule interacting and transport) domain (PF04212; HMM-score: 14)
    TPR (CL0020) PPR; PPR repeat (PF01535; HMM-score: 13.9)
    CuAO_N2_N3 (CL0047) DUF1965; Domain of unknown function (DUF1965) (PF09248; HMM-score: 11.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00145
    • TAT(Tat/SPI): 0.000074
    • LIPO(Sec/SPII): 0.00016
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNGVNLFSRMADCSLQSGNYSDAIRLYDEINEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRLQS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS07735&oldid=85731"