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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
- pan locus tag?: SAUPAN001695000
- symbol: NWMN_RS05820
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
- symbol: NWMN_RS05820
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1124831..1128295
- length: 3465
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1801
1861
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1981
2041
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2281
2341
2401
2461
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2641
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2941
3001
3061
3121
3181
3241
3301
3361
3421GTGACGGAATATAAAATTAAAGCGACTATTGAAGCTAGTGTAGCCAAATTCAAAAGGCAA
ATCGATAGTGCGGTTAAGTCTGTGCAAAGATTTAAACGAGTAGCAGATCAAACTAAAGAT
GTCGAATTAAATGCTGATGATAAAAAATTACAAAAAACTATCAAAGTTGCTAAAAAGTCT
TTAGATGCCTTTAGTAACAAAAAAGTAAAAGCTAAATTAGATGCTAGTATACAAGACTTG
CAACAAAAGGTACTAGAATCGAATTTTGAACTAGACAAACTAAACTCTAAAGAAGTTACT
CCAGAGATTAAATTACAAAAACAAAAATTGACTAAAGATATCGCTGAAGCAGAAGCTAAG
TTATCCGAACTAGAAAAGAAGCGTGTCAATATTGACATCAATGCAGATAACAGTAAATTC
AATCGAGTGTTAAAAGTATCTAAAGCTAGTCTTGAAGCATTAAATAGGTCTAAAGCCAAA
GCTATTATAGACGTGGACAATGGTGTTGCTAACTCTAAAATAAAACGCACTAAAGAAGAA
CTTAAAAGTATTCCAAACAAAACTAGATCTCGACTAGATGTAGATACAGGACTTTCTATA
CCAACTATTTATGCGTTTAAAAAATCATTAGACGCATTGCCAAACAAAAAAACAACGAAG
GTAGATGTCGATACTAACGGTTTAAAGAAAGCTTATGCCTACATAATAAAAGTAAACGAC
AATTTCCAAAGACAAATGGGGAATTTAGCTAATATGTTTCGCGTGTTCGGCACTGTAGGT
TCTAATATGGTTGGTGGATTACTTACATCATCTTTTAGTATCTTAATACCTGTAATAGCG
AGCGTAGTACCTGTAGTATTTGCGCTATTAAACGCTATCAAAGTGTTAACTGGCGGTGTA
CTTGCTTTAGGTGGTGCTGTAGCAATAGCTGGTGCTGGCTTTGTAGCATTTGGCGCAATG
GCTATCAGCGCTATAAAGATGCTTAGTGACGGCACTTTACAAGCTAGCTCAGCAACAAAC
GAATACAAAAAAGCTTTAGATGGCGTAAAGTCAGCATGGACTGATATTATAAAGCAAAAT
CAATCCGCTATCTTCACAACTCTTGCAAATGGTTTAAATACTGTTAAAACAGCAATGCAG
AGCTTACAACCGTTTTTTAGTGGTATTTCAAGAGGAATGGAAGAGGCGTCTCAAAGTGTA
CTTAAATGGGCTCAAAATAGCGGTGTAGCATCAAGGTTCTTCAACATGATGAATACAACT
GGTGTTTCGGTATTTAACAAGCTATTAAGTGCTGCAGGAGGTTTCGGTGACGGATTAGTC
AATGTGTTCACACAATTAGCACCACTGTTTCAATGGTCGGCTGATTGGTTGGATAGATTA
GGTCAATCATTCTCTAATTGGGCTAATAGTGCAGCTGGAGAAAATTCGATAACTCGTTTT
ATTGAATACACAAAAACAAACTTACCTATCATTGGTAATATTTTTAAAAATGTTTTCGTT
GGAATTAACAATTTGATGAATGCATTCAGTGGATCATCAACTGGCATATTCCAATCTCTT
GAACAAATGACAGCTAAGTTTAGGGAATGGTCTGAACAAGTAGGACAATCTCAAGGGTTT
AAAGATTTTGTCAGCTATATACAAACTAATGGACCACTAATAATGCAATTAATTGGGAAC
ATTGCAAGAGGATTAGTTGCATTCGCAACAGCGATGGCTCCTATAGCTAGTGCAGTATTA
CGCGTTGCAGTAGCAATAACTGGTTGGATAGCTAACTTGTTTGAGGCGCATCCAGCTACA
GCACAATTAGTTGGCGTCATTATAACTTTAGTTGGTGCATTTAGATTTTTAATTGCTCCA
ATATTAGCGGTAATGGATTTTCTGGGGCCATTAGCAGCAAGATTAGTCGCATTAGTAACT
AAGTTTGGTTGGGCTAAAACAGGAACTTTAGTATTAAGTAAGGCAATGACATCATTAAAA
GGTCCAATAAAATTAGTTACAGCTATATTCCAATTGTTATTCGGTAAGATTGGATTAATT
AGAAATGCTATCACAGGACTAGTAACTGTGTTTGGTATTTTAGGTGGTCCAATAACAATA
GTAATTGGTGTAATCGCTGCATTAATAGCTATATTTGTTTTATTGTGGAATAAAAATGAA
GGATTCAGAAACTTTATTATAAATGTTTGGAATGCGATAAAAACATTTATGGTTACAGTT
TGGAATGTGTTGAAAACTGTAGCTTCGGTTGTATGGAATGCTATTTTAAAAGCTATCACT
ACAGCAGTATCAAATGTATACAATTTTATAATGATTATTTGGAATCAAATAGTTGCTTAT
TTGCAAGGGCTATGGAATGGAATTATCGCTATTGCAACAACAGTATGGAACCTTTTAGTT
ACAATCATCACAACTGTTTTCACGACGATAATGACAATAGTTATGACGATATGGACAGCT
ATTTGGACATTCTTAAGTACAATCTGGAACACGATAATTACAATCGCTACTACGATTTGG
AATTTGTTAGTCACTGTAATAACTACAGTATTTACCACAATTATGACTATCGCAATGACA
ATTTGGAACGCTATTTGGACGTTCTTACAAACGTTGTGGAACACTATAGTTACTGTGGCA
ACTAAGGTTTGGAACGCTATCACTACAACTATATCTACTGCGTTACAAGCGGCATGGAGT
TTTATTTCTAATATATGGAATACGATTTGGAGTTTCTTATCTGGTATATTAACGACAATT
TGGAATAAAGTTGTAAGCATATTCACACAAGTTGTATCAACTATATCAGACAAAATGTCT
CAAGCTTGGAACTTCATCGTGACTAAAGGTATGCAATGGGTATCTACTATAACAAGTACG
CTAATTAACTTTGTTAATAGAGTTATTCAAGGATTCGTTAATGTTGTAAACAAAGTTAGT
CAAGGTATGACAAATGCAGTAAATAAAATAAAAAGTTTTATAGGAGATTTTGTGTCTGCA
GGTGCTGATATGATCCGTGGTTTAATTAGAGGTATTGGACAAATGGCTGGTCAATTAGTA
GATGCAGCTAAAAATGTTGCTAAGAAAGCTTTAGATGCAGCTAAAAGTGCTTTGGGTATT
CACTCACCTTCACGTGAATTCATGGATGTTGGTATGTATTCAATGCTAGGTTTCGTTAAA
GGTATAGATAATCATTCAAGTAAAGTTATCCGTAATGTTTCTAATGTTGCAGATAAAGTA
GTTGATGCATTTCAACCTACATTAAACGCACCTGACATTTCTAGTATTACAGGAAACTTA
AGTAATTTAGGTGGAAATATAAATGCGCAAGTACAACACACACATTCTATTGAAACATCA
CCGAACATGAAAACTGTTAAAGTTGAATTCGATGTTAATAACGATGCGCTTACTAGTATT
GTTAACGGCAGAAATGCTAAACGCAATTCTGAGTATTACTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS05820 [old locus tag: NWMN_1028 ]
- symbol: NWMN_RS05820
- description: hypothetical protein
- length: 1154
- theoretical pI: 10.6502
- theoretical MW: 125759
- GRAVY: 0.314905
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM: HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 10.2)and 2 moreTraffic (CL0147) Sec20; Sec20 (PF03908; HMM-score: 8)no clan defined Phasin_2; Phasin protein (PF09361; HMM-score: 7.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 14
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006002
- TAT(Tat/SPI): 0.000595
- LIPO(Sec/SPII): 0.001263
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTEYKIKATIEASVAKFKRQIDSAVKSVQRFKRVADQTKDVELNADDKKLQKTIKVAKKSLDAFSNKKVKAKLDASIQDLQQKVLESNFELDKLNSKEVTPEIKLQKQKLTKDIAEAEAKLSELEKKRVNIDINADNSKFNRVLKVSKASLEALNRSKAKAIIDVDNGVANSKIKRTKEELKSIPNKTRSRLDVDTGLSIPTIYAFKKSLDALPNKKTTKVDVDTNGLKKAYAYIIKVNDNFQRQMGNLANMFRVFGTVGSNMVGGLLTSSFSILIPVIASVVPVVFALLNAIKVLTGGVLALGGAVAIAGAGFVAFGAMAISAIKMLSDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNTVKTAMQSLQPFFSGISRGMEEASQSVLKWAQNSGVASRFFNMMNTTGVSVFNKLLSAAGGFGDGLVNVFTQLAPLFQWSADWLDRLGQSFSNWANSAAGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSSTGIFQSLEQMTAKFREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATAQLVGVIITLVGAFRFLIAPILAVMDFLGPLAARLVALVTKFGWAKTGTLVLSKAMTSLKGPIKLVTAIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWNKNEGFRNFIINVWNAIKTFMVTVWNVLKTVASVVWNAILKAITTAVSNVYNFIMIIWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAMTIWNAIWTFLQTLWNTIVTVATKVWNAITTTISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNFIVTKGMQWVSTITSTLINFVNRVIQGFVNVVNKVSQGMTNAVNKIKSFIGDFVSAGADMIRGLIRGIGQMAGQLVDAAKNVAKKALDAAKSALGIHSPSREFMDVGMYSMLGFVKGIDNHSSKVIRNVSNVADKVVDAFQPTLNAPDISSITGNLSNLGGNINAQVQHTHSIETSPNMKTVKVEFDVNNDALTSIVNGRNAKRNSEYYL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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