PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1025 [new locus tag: NWMN_RS05805 ]
• pan locus tag^?: SAUPAN001692000
• symbol: NWMN_1025
• pan gene symbol^?: —
• synonym:
• product: phage major tail protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1025 [new locus tag: NWMN_RS05805 ]
• symbol: NWMN_1025
• product: phage major tail protein
• replicon: chromosome
• strand: +
• coordinates: 1123431..1124012
• length: 582
• essential: unknown

⊟Accession numbers

• Gene ID: 5330629 NCBI
• RefSeq: YP_001332059 NCBI
• BioCyc:
• MicrobesOnline: 3706576 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

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  ATGGCAAATATGAAAAATAGTAATGATCGTATTATTTTATTTAGAAAAGCTGGCGAAAAA
  GTAGATGCTACTAAAATGCTTTTTTTAACTGAATACGGCTTATCACATGAAGCTGATACA
  GATACAGAGGATACAATGGACGGTTCTTATAACACTGGTGGTTCTGTTGAGTCAACAATG
  TCTGGTACTGCTAAAATGTTTTATGGTGACGATTTTGCAGATGAAATTGAAGATGCAGTT
  GTAGATCGCGTATTGTATGAAGCTTGGGAAGTTGAAAGTAGAATACCAGGCAAAAATGGA
  GATGCTACTAAATTTAAAGCGAAATATTTCCAAGGTTTCCACAATAAATTTGAATTAAAA
  GCAGAAGCTAACGGTATTGATGAATATGAATATGAATATGGAGTGAATGGTCGTTTCCAA
  CGTGGATTTGCAACATTGCCTGAGGCTGTAACAAAGAAACTTAAGGCGACTGGATACAGA
  TTCCATGACACTACAAAAGCAGATGCGTTAACTAGCGAAGATTTAACCGCAATTCCACAA
  CCTAAAGTAGATTCATCATCGGTTACACCAGGAGAGGTATAA
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  582
  

⊟Protein

⊟General

• locus tag: NWMN_1025 [new locus tag: NWMN_RS05805 ]
• symbol: NWMN_1025
• description: phage major tail protein
• length: 193
• theoretical pI: 4.47504
• theoretical MW: 21467.6
• GRAVY: -0.654922

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major tail protein, TP901-1 family (TIGR02126; HMM-score: 52.7)
• TheSEED:
• PFAM:
  Phage_TTPs (CL0569) Phage_tail_2; Phage tail tube protein (PF06199; HMM-score: 124.6)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.013981
  • TAT(Tat/SPI): 0.001119
  • LIPO(Sec/SPII): 0.002122
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151221237 NCBI
• RefSeq: YP_001332059 NCBI
• UniProt: A0A0H3KC80 UniProt

⊟Protein sequence

• MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTSEDLTAIPQPKVDSSSVTPGEV

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1018 > NWMN_1019 > NWMN_1020 > NWMN_1021 > NWMN_1022 > NWMN_1023 > NWMN_1024 > NWMN_1025 > NWMN_1026 > NWMN_1027 > NWMN_1028 > NWMN_1029 > NWMN_1030 > NWMN_1031 > NWMN_1032 > NWMN_1033

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications