PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1019 [new locus tag: NWMN_RS05775 ]
• pan locus tag^?: SAUPAN001686000
• symbol: NWMN_1019
• pan gene symbol^?: —
• synonym:
• product: phage head protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1019 [new locus tag: NWMN_RS05775 ]
• symbol: NWMN_1019
• product: phage head protein
• replicon: chromosome
• strand: +
• coordinates: 1120747..1121721
• length: 975
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 5330623 NCBI
• RefSeq: YP_001332053 NCBI
• BioCyc:
• MicrobesOnline: 3706570 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  
  ATGGAACAAACACAAAAATTAAAATTAAATTTGCAACATTTTGCAAGTAACAATGTTAAA
  CCACAAGTATTTAACCCTGACAATGTAATGATGCACGAAAAGAAAGATGGCACGTTGTTA
  AACGACTTTACAACACCTATCTTACAAGAGGTTATGGAAAACTCTAAAATTATGCAATTA
  GGTAAGTACGAACCAATGGAAGGTACTGAGAAGAAGTTTACTTTTTGGGCTGATAAACCA
  GGTGCTTACTGGGTAGGTGAAGGTCAAAAAATCGAAACATCTAAAGCTACATGGGTTAAT
  GCTACTATGAGAGCGTTTAAATTAGGGGTTATCTTACCTGTAACAAAAGAATTTTTGAAT
  TACACTTATTCACAATTCTTTGAAGAAATGAAGCCTATGATTGCTGAAGCATTCTATAAA
  AAGTTTGATGAAGCGGGTATTTTGAATCAAGGTAACAATCCATTCGGTAAATCAATTGCA
  CAATCAATTGAAAAAACTAATAAGGTTATTAAAGGTGACTTCACACAAGATAACATTATT
  GATTTAGAGGCATTACTTGAAGATGACGAATTAGAAGCAAATGCGTTTATCTCAAAAACA
  CAAAACAGAAGCTTGTTACGTAAAATTGTAGATCCTGAAACTAAGGAACGTATTTATGAC
  CGTAACAGTGATACGTTAGATGGTCTACCTGTGGTTAACCTTAAATCAAGCAATTTAAAA
  CGCGGTGAATTAATTACTGGTGACTTTGATAAGTTGATTTACGGTATCCCTCAATTAATT
  GAATACAAAATCGATGAAACTGCACAATTATCTACAGTTAAAAACGAAGATGGCACACCT
  GTAAACTTATTCGAACAAGACATGGTGGCATTGCGTGCAACTATGCATGTAGCGTTACAC
  ATCGCTGACGATAAAGCATTCGCTAAATTAGTGCCTGCTGACAAAAAAACAGATTCAGTA
  CCAGGAGAAGTTTAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  900
  960
  975
  

⊟Protein

⊟General

• locus tag: NWMN_1019 [new locus tag: NWMN_RS05775 ]
• symbol: NWMN_1019
• description: phage head protein
• length: 324
• theoretical pI: 4.87832
• theoretical MW: 36756.7
• GRAVY: -0.480864

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 67.2)
• TheSEED: data available for NCTC8325
• PFAM:
  Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 154.1)
  and 2 more
  no clan defined HHA; Haemolysin expression modulating protein (PF05321; HMM-score: 13.6)
  Tudor (CL0049) LBR_tudor; Lamin-B receptor of TUDOR domain (PF09465; HMM-score: 13.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002584
  • TAT(Tat/SPI): 0.000112
  • LIPO(Sec/SPII): 0.000311
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151221231 NCBI
• RefSeq: YP_001332053 NCBI
• UniProt: A0A0H3K861 UniProt

⊟Protein sequence

• MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1018 > NWMN_1019 > NWMN_1020 > NWMN_1021 > NWMN_1022 > NWMN_1023 > NWMN_1024 > NWMN_1025 > NWMN_1026 > NWMN_1027 > NWMN_1028 > NWMN_1029 > NWMN_1030 > NWMN_1031 > NWMN_1032 > NWMN_1033

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications