Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
- pan locus tag?: SAUPAN001443000
- symbol: NWMN_1001
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
- symbol: NWMN_1001
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1106921..1107592
- length: 672
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5330605 NCBI
- RefSeq: YP_001332035 NCBI
- BioCyc:
- MicrobesOnline: 3706552 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661ATGCAATACATTACAAGATACCAGAAAGATAACGACGGTACTTATTCCGTCGTTGCTACT
GGTGTTGAACTTGAACAAAGTCACATTGACTTACTAGAAAACGGATATCCACTAAAAGCA
GAAGTAGAGGTTCCGGACAATAAAAAACTATCTATAGAACAACGCAAAAAAATATTCGCA
ATGTGTAGAGATATAGAACTTCACTGGGGCGAACCAGTAGAATCAACTAGAAAATTATTA
CAAACAGAATTGGAAATTATGAAAGGTTATGAAGAAATCAGTCTGCGCGACTGTTCTATG
AAAGTTGCAAGGGAGTTAATAGAACTGATTATAGCGTTTATGTTTCATCATCAAATACCT
ATGAGTGTAGAAACGAGTAAGTTGTTAAGCGAAGATAAAGCGTTATTATATTGGGCTACA
ATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAGACCTGGCACATTATGAAGCA
GTCGGCAGAGGCATGAACAGAAACAAAATGAACCACTATGACAAACATGTATTAGCGTTA
TGTCGCGAACATCACAACGAGCAACATGCGATTGGCGTTAAGTCGTTTGATGATAAATAC
CACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAG
AAAAAGGAATGA60
120
180
240
300
360
420
480
540
600
660
672
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
- symbol: NWMN_1001
- description: hypothetical protein
- length: 223
- theoretical pI: 6.84054
- theoretical MW: 26076.8
- GRAVY: -0.585202
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL
- PFAM: His-Me_finger (CL0263) HNHc_6; Putative HNHc nuclease (PF16784; HMM-score: 396)and 1 moreDUF968; Protein of unknown function (DUF968) (PF06147; HMM-score: 23.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003723
- TAT(Tat/SPI): 0.000196
- LIPO(Sec/SPII): 0.000656
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQYITRYQKDNDGTYSVVATGVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFAMCRDIELHWGEPVESTRKLLQTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIPMSVETSKLLSEDKALLYWATINRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLALCREHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGEKKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.