PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

Views

• Read
• Edit
• History

More

• Edit source

⊟Summary

• organism: Staphylococcus aureus Newman
locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
pan locus tag^?: SAUPAN001443000
symbol: NWMN_1001
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
• symbol: NWMN_1001
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 1106921..1107592
• length: 672
• essential: unknown

⊟Accession numbers

• Gene ID: 5330605 NCBI
• RefSeq: YP_001332035 NCBI
• BioCyc:
• MicrobesOnline: 3706552 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  
  ATGCAATACATTACAAGATACCAGAAAGATAACGACGGTACTTATTCCGTCGTTGCTACT
  GGTGTTGAACTTGAACAAAGTCACATTGACTTACTAGAAAACGGATATCCACTAAAAGCA
  GAAGTAGAGGTTCCGGACAATAAAAAACTATCTATAGAACAACGCAAAAAAATATTCGCA
  ATGTGTAGAGATATAGAACTTCACTGGGGCGAACCAGTAGAATCAACTAGAAAATTATTA
  CAAACAGAATTGGAAATTATGAAAGGTTATGAAGAAATCAGTCTGCGCGACTGTTCTATG
  AAAGTTGCAAGGGAGTTAATAGAACTGATTATAGCGTTTATGTTTCATCATCAAATACCT
  ATGAGTGTAGAAACGAGTAAGTTGTTAAGCGAAGATAAAGCGTTATTATATTGGGCTACA
  ATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAGACCTGGCACATTATGAAGCA
  GTCGGCAGAGGCATGAACAGAAACAAAATGAACCACTATGACAAACATGTATTAGCGTTA
  TGTCGCGAACATCACAACGAGCAACATGCGATTGGCGTTAAGTCGTTTGATGATAAATAC
  CACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAG
  AAAAAGGAATGA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  672
  

⊟Protein

⊟General

• locus tag: NWMN_1001 [new locus tag: NWMN_RS05635 ]
• symbol: NWMN_1001
• description: hypothetical protein
• length: 223
• theoretical pI: 6.84054
• theoretical MW: 26076.8
• GRAVY: -0.585202

⊟Function

• TIGRFAM:
• TheSEED  :
  • Phage phi 11 orf14 protein homolog
• ⊞PFAM:
  His-Me_finger (CL0263) HNHc_6; Putative HNHc nuclease (PF16784; HMM-score: 389.2)
  and 1 more
  PUA (CL0178) LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain (PF02190; HMM-score: 12.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8406
  • Cytoplasmic Membrane Score: 0.1152
  • Cell wall & surface Score: 0.0003
  • Extracellular Score: 0.0439
• ⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003723
  • TAT(Tat/SPI): 0.000196
  • LIPO(Sec/SPII): 0.000656
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151221213 NCBI
• RefSeq: YP_001332035 NCBI
• UniProt: A0A0H3K818 UniProt

⊟Protein sequence

• MQYITRYQKDNDGTYSVVATGVELEQSHIDLLENGYPLKAEVEVPDNKKLSIEQRKKIFAMCRDIELHWGEPVESTRKLLQTELEIMKGYEEISLRDCSMKVARELIELIIAFMFHHQIPMSVETSKLLSEDKALLYWATINRNCVICGKPHADLAHYEAVGRGMNRNKMNHYDKHVLALCREHHNEQHAIGVKSFDDKYHLHDSWIKVDERLNKMLKGEKKE

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_0996 > NWMN_0997 > NWMN_0998 > NWMN_0999 > NWMN_1000 > NWMN_1001

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications