Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1000 [new locus tag: NWMN_RS05630 ]
- pan locus tag?: SAUPAN001672000
- symbol: NWMN_1000
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1000 [new locus tag: NWMN_RS05630 ]
- symbol: NWMN_1000
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1106357..1106908
- length: 552
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330604 NCBI
- RefSeq: YP_001332034 NCBI
- BioCyc:
- MicrobesOnline: 3706551 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541ATGAAAATCACAGGACAAGCGCAATTTACTAAAGAAACAAATCAAGAAAAGTTTTATAAC
GGCTCAGCAGGGTTTCAAGCTGGAGAATTCACAGTGAAAGTTAAAAATATTGAATTCAAT
GATAGAGAAAATAGATATTTCACAATCGTATTTGAAAATGATGAAGGCAAACAATATAAA
CATAATCAATTTGTACCGCCGTATAAATATGATTTCCAAGAAAAACAATTGATTGAATTA
GTTACTCGATTAGGTATTAAGTTAAATCTTCCTAGCTTAGATTTTGATACCAATGATCTT
ATTGGTAAGTTTTGTCACTTGGTATTGAAATGGAAATTCAATGAAGATGAAGGTAAGTAT
TTTACGGATTTTTCATTTATTAAACCTTACAAAAAGGGCGATGATGTTGTTAACAAACCT
ATTCCGAAGACAGATAAGCAAAAAGCTGAAGAAAATAACGGGGCACAACAACAAACATCA
ATGTCTCAACAAAGCAATCCATTTGAAAGCAGTGGCCAATTTGGATATGACGACCAAGAT
TTAGCGTTTTAA60
120
180
240
300
360
420
480
540
552
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1000 [new locus tag: NWMN_RS05630 ]
- symbol: NWMN_1000
- description: hypothetical protein
- length: 183
- theoretical pI: 5.11219
- theoretical MW: 21353.6
- GRAVY: -0.931148
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.016152
- TAT(Tat/SPI): 0.001571
- LIPO(Sec/SPII): 0.003299
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKITGQAQFTKETNQEKFYNGSAGFQAGEFTVKVKNIEFNDRENRYFTIVFENDEGKQYKHNQFVPPYKYDFQEKQLIELVTRLGIKLNLPSLDFDTNDLIGKFCHLVLKWKFNEDEGKYFTDFSFIKPYKKGDDVVNKPIPKTDKQKAEENNGAQQQTSMSQQSNPFESSGQFGYDDQDLAF
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.