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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0912 [new locus tag: NWMN_RS05110 ]
  • pan locus tag?: SAUPAN003244000
  • symbol: NWMN_0912
  • pan gene symbol?: menF
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0912 [new locus tag: NWMN_RS05110 ]
  • symbol: NWMN_0912
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1009686..1011056
  • length: 1371
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGAAATGGATGGCTACGGGCGTATTAGAGGACGATATTGTCAAAGAGATATATGGCAGC
    TCAAAGGAATGGGTTTCAGTTGAAGTGAAATTATCACAGTCACTAGACCCGAGCACATTA
    TTTCATCTCACTGACAATGAGGCAGGAGATCGCTTTTATATGCGTTTGAATGATAATCGA
    ACGTCATATTTTGGCTACAAAGCAATTCAATTATTCAAAAATAATTCTAAAAATAAACAA
    TCTATTTTTAAAGACTGGGAAAAATTAAAACATAACATCACATTTATACATCCGCAATCT
    GAGAAACATCATCTTCGAGTTGTTGGAGGGTTCCAATTTTCAAGTCATAAATCAGATGAT
    GAATGGCGAGAGTTTGGACTAAATCATTTTGTATTACCTGAAGTTTTAATTTCAACTGAT
    AATAATGGGACATTTTTAACTTATACAGTTAAAAGGGAAAGTTTTACTGTTGAGGCATTG
    AACGATTTAATGGATTTGTTCAACAATATATCGGACATAGATGTGGACGAGCAAATTGGG
    GAAATTACTAGAAATGAAGATATTTATAAAGATGACTGGCGTCAACTTGTAGTAGAAGCT
    ATAGAATCTATTAATAATGAAGAAAAAATTGTACTAGCACGTAGACGGTTAATAAAGTTC
    GATAAAGATATCAGTATTCCATATATTCTAAAGCAAGCATATTCTAAAGAAAAAAACAGT
    TATATATTCTTGTTAGAATCACAAGATTCTATATTCTTTTCACAAACACCTGAACAATTA
    ATAAAGGTCAATAATAAAATACTATCGACTAAAGCTGTAGCAGGTACAATTAAACGTTCA
    CAAGATGAGGACGAAGATACAAAAAATGTTGAAGCATTTTTAAAAGATAATAAAAACTTA
    ATCGAACATCGATTTGTTGTTGACAGTATTTTACATGATATTAAACCTTATATCACTGAA
    TTACATTATGATAAGACGCCTAAAATTCTAAAAAATGATCATTTATATCACTTGTACACT
    GAAATAAAGGCGCCACTGAAGGATGATTCGTATATTAGTTTAATTGATAATTTACATCCA
    ACACCTGCTTTAGGTGGCTATCCAAAAGAATTTGCAATGGATTTTATTGAGCAGAAAGAA
    TTTGGTACGCGAGGATTATATGGTGCACCGGTTGGCTATATAGATATATACGATGATTGT
    GAATTTATTGTTGCAATTCGTTCGATGCTTATTAAGAAAGCACAAGCAACTTTATTTGCT
    GGGTGTGGCATTGTTAAAGATTCTGATCCAGATAGTGAATTGGCAGAAACGAACCTTAAG
    TTCACACCTATGATGAATGCATTAGGAGTCGATATGAATGGGAAATCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1371

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0912 [new locus tag: NWMN_RS05110 ]
  • symbol: NWMN_0912
  • description: hypothetical protein
  • length: 456
  • theoretical pI: 5.09969
  • theoretical MW: 52667.3
  • GRAVY: -0.463377

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone isochorismate synthase (TIGR00543; EC 5.4.4.2; HMM-score: 411.2)
    and 8 more
    Metabolism Amino acid biosynthesis Aromatic amino acid family anthranilate synthase component I (TIGR01820; EC 4.1.3.27; HMM-score: 153)
    Metabolism Amino acid biosynthesis Aromatic amino acid family anthranilate synthase component I (TIGR00564; EC 4.1.3.27; HMM-score: 139.4)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Folic acid aminodeoxychorismate synthase, component I (TIGR00553; EC 2.6.1.85; HMM-score: 118.5)
    aminodeoxychorismate synthase, component I (TIGR01824; EC 2.6.1.85; HMM-score: 107)
    salicylate synthase (TIGR03494; EC 4.1.3.-,5.4.4.2; HMM-score: 89.7)
    Metabolism Amino acid biosynthesis Aromatic amino acid family anthranilate synthase component I (TIGR00565; EC 4.1.3.27; HMM-score: 83)
    Metabolism Amino acid biosynthesis Aromatic amino acid family anthranilate synthase (TIGR01815; EC 4.1.3.27; HMM-score: 59.9)
    aminodeoxychorismate synthase (TIGR01823; EC 2.6.1.85; HMM-score: 59)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined Chorismate_bind; chorismate binding enzyme (PF00425; HMM-score: 217.1)
    and 1 more
    ATP_synthase (CL0255) vATP-synt_E; ATP synthase (E/31 kDa) subunit (PF01991; HMM-score: 16.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008436
    • TAT(Tat/SPI): 0.000243
    • LIPO(Sec/SPII): 0.001175
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKWMATGVLEDDIVKEIYGSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGDRFYMRLNDNRTSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDDEWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIGEITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNSYIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNLIEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHPTPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFAGCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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