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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003244000
- symbol?: menF
- synonym:
- description?: isochorismate synthase
- isochorismate synthase
- isochorismate synthase, putative
- isochorismate synthase family protein
- Menaquinone-specific isochorismate synthase
- chorismate binding protein
- isochorismate synthases family protein
- menaquinone-specific isochorismate
- putative chorismate binding enzyme
- salicylate biosynthesis isochorismate synthase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3620279..3621649
- synteny block?: BlockID0023280
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0997
08BA02176:
C248_1067
11819-97:
MS7_1000
6850:
RSAU_000931 (menF)
71193:
ST398NM01_1040
ECT-R 2:
ECTR2_898 (menF)
ED133:
SAOV_0988
ED98:
SAAV_1006
HO 5096 0412:
SAEMRSA15_08740
JH1:
SaurJH1_1124
JH9:
SaurJH9_1101
JKD6008:
SAA6008_00997 (menF)
JKD6159:
SAA6159_00899 (menF)
LGA251:
SARLGA251_09570
M013:
M013TW_0972
MRSA252:
SAR1016
MSHR1132:
SAMSHR1132_08910
MSSA476:
SAS0978
Mu3:
SAHV_1035
Mu50:
SAV1042
MW2:
MW0926
RF122:
SAB0909
ST398:
SAPIG1040
T0131:
SAT0131_01077
TCH60:
HMPREF0772_12193 (menF)
TW20:
SATW20_10390
USA300_TCH1516:
USA300HOU_0990 (menF)
VC40:
SAVC_04380
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL -----------------------------------------------------MRLNDNR
N315 ---MATGVLEDDIVKEIYGSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGDRFYMRLNDNR
NCTC8325 -----------------------------------------------------MRLNDNR
Newman MKWMATGVLEDDIVKEIYGSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGDRFYMRLNDNR
USA300_FPR3757 -----------------------------------------------------MRLNDNR
*******
COL TSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDD
N315 TSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDD
NCTC8325 TSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDD
Newman TSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDD
USA300_FPR3757 TSYFGYKAIQLFKNNSKNKQSIFKDWEKLKHNITFIHPQSEKHHLRVVGGFQFSSHKSDD
************************************************************
COL EWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIG
N315 EWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIG
NCTC8325 EWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIG
Newman EWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIG
USA300_FPR3757 EWREFGLNHFVLPEVLISTDNNGTFLTYTVKRESFTVEALNDLMDLFNNISDIDVDEQIG
************************************************************
COL EITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNS
N315 EITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNS
NCTC8325 EITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNS
Newman EITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNS
USA300_FPR3757 GITRNEDIYKDDWRQLVVEAIESINNEEKIVLARRRLIKFDKDISIPYILKQAYSKEKNS
***********************************************************
COL YIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNL
N315 YIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNL
NCTC8325 YIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNL
Newman YIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNL
USA300_FPR3757 YIFLLESQDSIFFSQTPEQLIKVNNKILSTKAVAGTIKRSQDEDEDTKNVEAFLKDNKNL
************************************************************
COL IEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHP
N315 IEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDHLHP
NCTC8325 IEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHP
Newman IEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHP
USA300_FPR3757 IEHRFVVDSILHDIKPYITELHYDKTPKILKNDHLYHLYTEIKAPLKDDSYISLIDNLHP
********************************************************:***
COL TPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFA
N315 TPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFA
NCTC8325 TPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFA
Newman TPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFA
USA300_FPR3757 TPALGGYPKEFAMDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKKAQATLFA
************************************************************
COL GCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
N315 GCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
NCTC8325 GCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
Newman GCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
USA300_FPR3757 GCGIVKDSDPDSELAETNLKFTPMMNALGVDMNGKS
************************************