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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001967
- pan locus tag?: SAUPAN004998000
- symbol: pmtB
- pan gene symbol?: pmtB
- synonym:
- product: phenol-soluble modulin export ABC transporter permease subunit PmtB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001967
- symbol: pmtB
- product: phenol-soluble modulin export ABC transporter permease subunit PmtB
- replicon: chromosome
- strand: -
- coordinates: 1980337..1981017
- length: 681
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661ATGAAGGCATTGTTAATTAGGAATTTTAAATTACGACGATATACACTTATCATCTATGTT
CTATTATTAACCTTATATCCTTTTTATATAATGTTTGACTCAACAAAGTTCTTTTACCTA
TTGCAATCTTTTATAAGTCCAACAATATTGATTATTTGGATTTTAGATGCTGGTCACTTA
TTTAGACTCAATCGTAGATTAGGTGGTAATGATTCATATTATTTTTATATGAGTTTACCA
GTGTCAAAAAAACAATTGCTTAATGCCAACTATATTACATGCATTGTTTTAACATTAATT
GGAACGCTTGTTATTAGTTTATATGCTTATGAAGCAGATGTGATTGAACCAAATTCAATC
TATTTTTCAACTGCATATGCATTTGTCATATCTAACTTCTTGTCTATACCAATTGCATTT
AGTCAATTTACAGAATTGCGTAGAGTCAAAGTGCCATATGGTATATACGTGTTTACTATT
ATCATTTTAGTTCCATTTTTATTTTCAATTGCAATAGTATTGGTGAATTATTTTGTTCTA
AGTCAATCATCATTCCCAGATTTATATTCATATATTTTAAATATTGGTTTTCTAATTATA
AGCATTGTTATACTTATTGTTAATTATTTTAAACAGCTCAATAAAATAAATACTAGAAAA
TTTAAAGGAGGCAGTCGATGA60
120
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001967
- symbol: PmtB
- description: phenol-soluble modulin export ABC transporter permease subunit PmtB
- length: 226
- theoretical pI: 10.0187
- theoretical MW: 26327.3
- GRAVY: 0.780531
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 89.1)and 2 moreno clan defined DUF6297; Family of unknown function (DUF6297) (PF19814; HMM-score: 12.2)DUF441; Protein of unknown function (DUF441) (PF04284; HMM-score: 6.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.9771
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0227
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002613
- TAT(Tat/SPI): 0.000127
- LIPO(Sec/SPII): 0.001523
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMFDSTKFFYLLQSFISPTILIIWILDAGHLFRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for N315
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Som S Chatterjee, Hwang-Soo Joo, Anthony C Duong, Thomas D Dieringer, Vee Y Tan, Yan Song, Elizabeth R Fischer, Gordon Y C Cheung, Min Li, Michael Otto
Essential Staphylococcus aureus toxin export system.
Nat Med: 2013, 19(3);364-7
[PubMed:23396209] [WorldCat.org] [DOI] (I p)