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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001806
- pan locus tag?: SAUPAN001332000
- symbol: splE2
- pan gene symbol?: splE2
- synonym:
- product: serine protease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001806
- symbol: splE2
- product: serine protease
- replicon: chromosome
- strand: -
- coordinates: 1853275..1853991
- length: 717
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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661ATGAATAAAAATATAATCATCAATAGTATTGCAGCATTGACGATTTTAACATCAGTGACT
GGTGTCGGCACAACAATTATTGAAGGTATTCAACAAACGGCTAAAGCTGAACATAATGTG
ACACAAGTACAAAACACAAGTATCTCACCTTATAAAGGTATTGTTAGAATTGGATCAGCT
ACAGGATTTGTGGTAGGAAAAAACACAATTTTAACTAATAAGCATGTATTACCAGGAGTT
CAAGTTGGTAGTACAATTATTGCTCATCCAAATGGCGAAAATGATACAGGTGGATTCTAT
AAAGTTAAAAAAATCATTCCATACGCAGGAACAGAAGATTTAGCAATAGTTCAAGTTGAA
GAAGATTCTGTTTATCCAAAAAATAAAAAATTCAGTGAAAATACCGAAGTCCTTAAATTT
GCGAGTGGTGCTAAAGTAAATGATCGATTGTCAATCGTTGGTTATCCTAAACCTTACAAA
AATAAGCATCATATGTTTGAATCAACTGGAAAAGTATTATCAATCGATGGTAATCAAATG
ACTTCAGACGCATTTGCTGAAGGCGGTAATTCAGGATCACCAGTGTTTAATTCAAATCAT
GAAGTAATTGCAATTGCATATGCTGTCGATGTCAAAAATGATGCAACAAAAAAATCATAT
TTAGTTTATTTCACACCAGAAATCAAGAAATTCATCGCAGATAACACAGATAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001806
- symbol: SplE2
- description: serine protease
- length: 238
- theoretical pI: 9.35233
- theoretical MW: 25680
- GRAVY: -0.217647
⊟Function[edit | edit source]
- reaction: EC 3.4.21.-? ExPASy
- TIGRFAM: Cellular processes Sporulation and germination sporulation peptidase YabG (TIGR02855; HMM-score: 18.6)
- TheSEED:
- PFAM: Peptidase_PA (CL0124) Trypsin_2; Trypsin-like peptidase domain (PF13365; HMM-score: 67.4)Trypsin; Trypsin (PF00089; HMM-score: 65.5)and 4 morePeptidase_S7; Peptidase S7, Flavivirus NS3 serine protease (PF00949; HMM-score: 18.5)Peptidase_S46; Peptidase S46 (PF10459; HMM-score: 17.4)Mycop_pep_DUF31; Mycoplasma peptidase (DUF31) (PF01732; HMM-score: 16.3)no clan defined Peptidase_U57; YabG peptidase U57 (PF05582; HMM-score: 16)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.73
- Internal Helix: 1
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0.0029
- Extracellular Score: 0.997
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 36 aa
- SP(Sec/SPI): 0.888966
- TAT(Tat/SPI): 0.008542
- LIPO(Sec/SPII): 0.026938
- Cleavage Site: CS pos: 36-37. AKA-EH. Pr: 0.7556
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MNKNIIINSIAALTILTSVTGVGTTIIEGIQQTAKAEHNVTQVQNTSISPYKGIVRIGSATGFVVGKNTILTNKHVLPGVQVGSTIIAHPNGENDTGGFYKVKKIIPYAGTEDLAIVQVEEDSVYPKNKKFSENTEVLKFASGAKVNDRLSIVGYPKPYKNKHHMFESTGKVLSIDGNQMTSDAFAEGGNSGSPVFNSNHEVIAIAYAVDVKNDATKKSYLVYFTPEIKKFIADNTDK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)