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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001483
  • pan locus tag?: SAUPAN004028000
  • symbol: JSNZ_001483
  • pan gene symbol?: scpA
  • synonym:
  • product: segregation/condensation protein A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001483
  • symbol: JSNZ_001483
  • product: segregation/condensation protein A
  • replicon: chromosome
  • strand: -
  • coordinates: 1527621..1528352
  • length: 732
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGTATGAAGTTAAATTAGATGCTTTCAATGGACCATTAGATTTATTGCTGCATCTTATC
    CAAAAATTTGAAATAGATATTTATGATATTCCTATGCAAGAATTAACAGAGCAGTATATG
    CAGTACGTTCATGCAATGAAACAGCTTGAAATTAATATTGCAAGTGAATACCTAGTATTA
    GCGTCAGAACTCTTAATGATTAAAAGTAAGATGCTATTACCACAATCAACATCAGATATG
    GATGTTGATGATGACCCACGGGAAGATTTAGTTGGGCGTTTAATAGAATATCAAAATTAT
    AAAGAATATACTGCTATTTTAAATGACATGAAAGAAGAAAGAGATTTTTATTTTACTAAA
    AGACCGACAGATTTATCTCATTTGGAAACAGATGAATCTTGGGATCCAAATCATACGATT
    GATTTAACTGAATTAATTGTAGCTTATCAAAGAGTTAAAAATAGAGTTGAGTTAAATACA
    CCTAAATCTGTTGAAATCCGAAAAGAGACATTTACCATTCAACAAGCTACAGAACAAGTG
    ACATCGAGATTGAAAGATAAAGATCATTTTAACTTCTTTAGTCTGTTTACGTTTTCTGAG
    CCAATTGAACAAGTAGTCACTCACTTTTTAGCTATTTTAGAGATGTCAAAAGCAGGAATA
    ATTAATATTGAGCAACAACGTAATTTTGAAGATATTAACATTATTAGAGGAGTGAACTAC
    CATTTTGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    732

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001483
  • symbol: JSNZ_001483
  • description: segregation/condensation protein A
  • length: 243
  • theoretical pI: 4.43235
  • theoretical MW: 28728.5
  • GRAVY: -0.395062

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Kleisin (CL0157) SMC_ScpA; Segregation and condensation protein ScpA (PF02616; HMM-score: 131.8)
    and 3 more
    Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein (PF04824; HMM-score: 14.8)
    no clan defined EB1; EB1-like C-terminal motif (PF03271; HMM-score: 9.9)
    HTH (CL0123) DUF7516; Domain of unknown function (DUF7516) (PF24360; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9115
    • Cytoplasmic Membrane Score: 0.0836
    • Cell wall & surface Score: 0.0017
    • Extracellular Score: 0.0032
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002941
    • TAT(Tat/SPI): 0.00006
    • LIPO(Sec/SPII): 0.000241
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MYEVKLDAFNGPLDLLLHLIQKFEIDIYDIPMQELTEQYMQYVHAMKQLEINIASEYLVLASELLMIKSKMLLPQSTSDMDVDDDPREDLVGRLIEYQNYKEYTAILNDMKEERDFYFTKRPTDLSHLETDESWDPNHTIDLTELIVAYQRVKNRVELNTPKSVEIRKETFTIQQATEQVTSRLKDKDHFNFFSLFTFSEPIEQVVTHFLAILEMSKAGIINIEQQRNFEDINIIRGVNYHFG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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