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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001410
- pan locus tag?: SAUPAN003857000
- symbol: fakB2
- pan gene symbol?: fakB2
- synonym:
- product: fatty acid kinase binding subunit FakB2
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001410
- symbol: fakB2
- product: fatty acid kinase binding subunit FakB2
- replicon: chromosome
- strand: -
- coordinates: 1424009..1424848
- length: 840
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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781ATGACAAAACAGATTATAGTAACAGACTCAACATCCGATTTATCTAAAGTATACTTAGAA
GCAAACAACATTCATGTAATTCCTTTAAGTTTAACTATTGAAGGAGCTTCATACGTTGAC
CAAGTAGATATTACATCAGAAGAATTTATTAATCATATTGAAAATGATGAAGATGTAAAG
ACAAGTCAGCCAGCCATAGGTGAATTTATATCTGCTTATGAAGAACTAGGAAAAGATGGC
GCCGAAATCATAAGTATTCATCTTTCTTCAGGATTAAGTGGTACATATAACACTGCTTAC
CAAGCAAGTCAAATGGTAGATGCTAATGTAACTGTTATTGATTCAAAATCTATTTCTTTT
GGTTTAGGGTATCAAATACAACACCTAGTAGAGCTTGTGAAAGAAGGTGTCTCAACTTCT
GAAATAGTTAAAAAGTTAAATCATTTAAGAGAAAACATTAAATTATTTGTAGTTATAGGG
CAATTGAATCAATTAATTAAAGGTGGCAGAATTAGTAAAACAAAAGGTTTGATTGGTAAT
CTTATGAAAATTAAACCAATTGGTACACTAGATGATGGTCGCTTAGAGCTTGTGCACAAT
GCGAGAACTCAAAATTCTAGTATCCAATACTTGAAAAAGGAAATTGCTGAATTTATAGGA
GATCATGAAATCAAATCCGTTGGTGTCGCACATGCTAACGTCATTGAATATGTTGATAAA
TTGAAGAAAGTTTTTAATGAAGCTTTTCATGTGAATAATTACGATATAAATGTAACTACA
CCAGTTATTTCTGCACATACTGGTCAAGGTGCGATTGGCCTAGTAGTCCTTAAGAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001410
- symbol: FakB2
- description: fatty acid kinase binding subunit FakB2
- length: 279
- theoretical pI: 5.99139
- theoretical MW: 30584.6
- GRAVY: -0.0562724
⊟Function[edit | edit source]
- TIGRFAM: Unknown function General EDD domain protein, DegV family (TIGR00762; HMM-score: 326.6)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: EDD (CL0245) DegV; Uncharacterised protein, DegV family COG1307 (PF02645; HMM-score: 287.4)and 1 moreFakA-like_C; Fatty acid kinase subunit A-like, C-terminal (PF13684; HMM-score: 32.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9767
- Cytoplasmic Membrane Score: 0.015
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.0077
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00396
- TAT(Tat/SPI): 0.000243
- LIPO(Sec/SPII): 0.00039
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MTKQIIVTDSTSDLSKVYLEANNIHVIPLSLTIEGASYVDQVDITSEEFINHIENDEDVKTSQPAIGEFISAYEELGKDGAEIISIHLSSGLSGTYNTAYQASQMVDANVTVIDSKSISFGLGYQIQHLVELVKEGVSTSEIVKKLNHLRENIKLFVVIGQLNQLIKGGRISKTKGLIGNLMKIKPIGTLDDGRLELVHNARTQNSSIQYLKKEIAEFIGDHEIKSVGVAHANVIEYVDKLKKVFNEAFHVNNYDINVTTPVISAHTGQGAIGLVVLKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Joshua B Parsons, Tyler C Broussard, Jeffrey L Bose, Jason W Rosch, Pamela Jackson, Chitra Subramanian, Charles O Rock
Identification of a two-component fatty acid kinase responsible for host fatty acid incorporation by Staphylococcus aureus.
Proc Natl Acad Sci U S A: 2014, 111(29);10532-7
[PubMed:25002480] [WorldCat.org] [DOI] (I p)