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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000446
  • pan locus tag?: SAUPAN002247000
  • symbol: JSNZ_000446
  • pan gene symbol?: —
  • synonym:
  • product: RNA-binding S4 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000446
  • symbol: JSNZ_000446
  • product: RNA-binding S4 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 479399..479662
  • length: 264
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGAGATTAGATAAATATTTAAAAGTATCACGGTTAATAAAGCGACGTACGCTAGCAAAA
    GAAGTAAGTGATCAAGGTAGAATTACAATAAATGGTAATGTTGCTAAAGCTGGATCGGAT
    GTTAAAGTTGAAGATGTGCTGACGATTCGCTTTGGTCAAAAATTAGTAACAGTTAAAGTA
    ACTGCATTAAATGAATATGCATCTAAAGATAACGCGAAGGGCATGTATGAAATCGTTGAA
    GAGCGTCGACTTGAAGAAGCGTAA
    60
    120
    180
    240
    264

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000446
  • symbol: JSNZ_000446
  • description: RNA-binding S4 domain-containing protein
  • length: 87
  • theoretical pI: 10.2538
  • theoretical MW: 9868.37
  • GRAVY: -0.45977

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9979
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0019
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010532
    • TAT(Tat/SPI): 0.001595
    • LIPO(Sec/SPII): 0.001612
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKVTALNEYASKDNAKGMYEIVEERRLEEA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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