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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000102
  • pan locus tag?: SAUPAN000988000
  • symbol: cap8K
  • pan gene symbol?: cap8K
  • synonym:
  • product: type 8 capsular polysaccharide synthesis protein Cap8K

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000102
  • symbol: cap8K
  • product: type 8 capsular polysaccharide synthesis protein Cap8K
  • replicon: chromosome
  • strand: +
  • coordinates: 118861..120099
  • length: 1239
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAGATTAAATAAATTTATTGGCGATTCGTTCTTAATGATTTTAAGCAGTGGCATCGCT
    CAAGTCATATTAATCATCACTACCCCAATTATTACAAGACTATATTCACCTACAGAATTT
    GGTGAGTTTACAATTTTTTCAAATATCGCAATGATTTTAATACCAATAATAAATGCAAGA
    TACGATTTGTTGATTGTGAATACTAAAAATGACCGTAGTGCTAATATACTTTCACAAATC
    AGTTTTTTGATATCATTGCTTATTTTATTAATACTGATACCAATATTTGCGATTAGTGCA
    TGTTTATACCCAAACTTTATATTAGATTTTATTTTCATTATTATTATGTTGTTTTTGGTA
    AGTTTAACAAACATTTTTACAAATTATCTAAATAAGGAAAGAAAGTATAAAGTGTTAAGT
    TTGATTAATGTGTTTAGAGCTGGATCAATGGCTTTACTTCAAATCATTTTCGGACTTTTA
    GCATTAGGAAGTTTAGGATTAATTATTGGTTTTTCATTATCCTATATCGCAGGCATTACA
    CTAGGATATAAAACGTTTAAAAAGCACTTTAATATTGTGAGAGATAAAGAAGAAACTAAA
    GCATTATTTTTAGAAAATAAAAATCAGTTAGTTTATTCAACACCATCAATATTATTAAAT
    AGTTTGTCTTTCTCGGTTGTTGTGTTCTTTATAGGTATTTTGTATACCAATACAGAAGTG
    GGTATTTATGGTATGGCCATAAGAGTACTAGGCATACCAGTGACAATTATTTCATTAGGG
    TTATCAAAAATATTTATGCAACAAGCCAATGACTATTATATTGAACATGGTAACTTCCGA
    AATTTATTACTTAAATTTAGTTCCATACTGGTTATAGTTTCTATAATTCTTTATGTGCCA
    CTTTATTTGTTCAGTGAAGAATTAGTCAATATATTATTAGGACATAGCTGGGTTGACGCA
    ATTACAGTTATAAAAATTGTTATCCCATTATTTGTTATAAGGCTGATTGTATCAACGGTA
    TCACTTTCTGTGATTGTATTACAAAAACAACAGTTAGAATTAATACTACAAGCGTTATTT
    TTAATAGGTACTACTGCAACATTTGTTATATCAAAAATGCTTAATTTAACTTTTTTAAAC
    TTTGTATCTATTAATACAATTGTTTTAATCGTATCGTACATGATATTTTTCATAGCACTC
    TATTATTTTGCTAAAAATAAACAGTTCAAAAATTCTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1239

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000102
  • symbol: Cap8K
  • description: type 8 capsular polysaccharide synthesis protein Cap8K
  • length: 412
  • theoretical pI: 9.9257
  • theoretical MW: 46539.8
  • GRAVY: 1.00874

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    MviN_MATE (CL0222) Polysacc_synt_3; Polysaccharide biosynthesis protein (PF13440; HMM-score: 59.6)
    and 1 more
    Polysacc_synt; Polysaccharide biosynthesis protein (PF01943; HMM-score: 36)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9978
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0021
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.083785
    • TAT(Tat/SPI): 0.001106
    • LIPO(Sec/SPII): 0.012951
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRLNKFIGDSFLMILSSGIAQVILIITTPIITRLYSPTEFGEFTIFSNIAMILIPIINARYDLLIVNTKNDRSANILSQISFLISLLILLILIPIFAISACLYPNFILDFIFIIIMLFLVSLTNIFTNYLNKERKYKVLSLINVFRAGSMALLQIIFGLLALGSLGLIIGFSLSYIAGITLGYKTFKKHFNIVRDKEETKALFLENKNQLVYSTPSILLNSLSFSVVVFFIGILYTNTEVGIYGMAIRVLGIPVTIISLGLSKIFMQQANDYYIEHGNFRNLLLKFSSILVIVSIILYVPLYLFSEELVNILLGHSWVDAITVIKIVIPLFVIRLIVSTVSLSVIVLQKQQLELILQALFLIGTTATFVISKMLNLTFLNFVSINTIVLIVSYMIFFIALYYFAKNKQFKNS

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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