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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000101
- pan locus tag?: SAUPAN000985000
- symbol: cap8J
- pan gene symbol?: cap8J
- synonym:
- product: type 8 capsular polysaccharide synthesis protein Cap8J
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000101
- symbol: cap8J
- product: type 8 capsular polysaccharide synthesis protein Cap8J
- replicon: chromosome
- strand: +
- coordinates: 118295..118852
- length: 558
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGATTGTAAAAACATTTATGAAATCGAAAATATTTAGATTAATGAATACACCACTATTA
TTATTTTATAAGAAAGAATATTTAACTGGATATTATTTTGAAAATAAAGTGGCTGGATGG
TTATGGGCGTGGAAAGCTGTTCCGTTCAAGTTGTTAGGAATAAATACGAGTTTGCCATTT
CCTGCAGATATAACTGTTAGAATGCATAACCCTAATAACATTGTTTTTGATAAAAATGAT
ATTCATATTTTTCAATCGCCCGGGACGTATTTTAATAATTTTTCAGCAGTTATATATATA
GGTAGAGGTGTTTATATAGCGCCTAACGTAGGTATTATTACAGCTAATCATAATATTAAA
AATTTGAAGTCACATGCACCAGGGGAAGATGTCAAAATAGGGAATTATAGTTGGATTGGA
ATGAACTCAGTTATATTACCAGGAGTAGAATTGGGGGAACATACAATTGTAGGGGCTGGG
TCGGTTGTAACAAAAAGTTTTCCAGAAGGTAACGTTGTTATAGGTGGCAATCCAGCGAAA
GTCATCAAGAAAATCTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000101
- symbol: Cap8J
- description: type 8 capsular polysaccharide synthesis protein Cap8J
- length: 185
- theoretical pI: 10.2319
- theoretical MW: 20600
- GRAVY: 0.127027
⊟Function[edit | edit source]
- TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family (TIGR03570; HMM-score: 52.3)phosphonate metabolim protein, transferase hexapeptide repeat family (TIGR03308; HMM-score: 44.9)and 11 more2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (TIGR03532; EC 2.3.1.89; HMM-score: 40.9)colanic acid biosynthesis acetyltransferase WcaF (TIGR04008; EC 2.3.1.-; HMM-score: 39.4)Energy metabolism Other phenylacetic acid degradation protein PaaY (TIGR02287; HMM-score: 28.8)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 24.8)Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 24.8)Central intermediary metabolism Amino sugars UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (TIGR01173; EC 2.3.1.157,2.7.7.23; HMM-score: 24.8)colanic acid biosynthesis acetyltransferase WcaB (TIGR04016; EC 2.3.1.-; HMM-score: 24.6)Amino acid biosynthesis Serine family serine O-acetyltransferase (TIGR01172; EC 2.3.1.30; HMM-score: 24.3)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD (TIGR01853; EC 2.3.1.191; HMM-score: 18)non-ribosomal peptide synthetase terminal domain of unknown function (TIGR02353; HMM-score: 15.4)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase (TIGR01852; EC 2.3.1.129; HMM-score: 13.1)
- TheSEED:
- PFAM: HEXAPEP (CL0536) Hexapep; Bacterial transferase hexapeptide (six repeats) (PF00132; HMM-score: 49.6)and 2 moreHexapep_2; Hexapeptide repeat of succinyl-transferase (PF14602; HMM-score: 27.4)LbH_EIF2B; EIF2B subunit epsilon LbH domain (PF25084; HMM-score: 14.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.64
- Cytoplasmic Membrane Score: 0.3
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.2464
- Cytoplasmic Membrane Score: 0.7125
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.041
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005866
- TAT(Tat/SPI): 0.000236
- LIPO(Sec/SPII): 0.001864
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MIVKTFMKSKIFRLMNTPLLLFYKKEYLTGYYFENKVAGWLWAWKAVPFKLLGINTSLPFPADITVRMHNPNNIVFDKNDIHIFQSPGTYFNNFSAVIYIGRGVYIAPNVGIITANHNIKNLKSHAPGEDVKIGNYSWIGMNSVILPGVELGEHTIVGAGSVVTKSFPEGNVVIGGNPAKVIKKI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)