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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000099
  • pan locus tag?: SAUPAN000983000
  • symbol: cap8H
  • pan gene symbol?: cap8H
  • synonym:
  • product: type 8 capsular polysaccharide synthesis protein Cap8H

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000099
  • symbol: cap8H
  • product: type 8 capsular polysaccharide synthesis protein Cap8H
  • replicon: chromosome
  • strand: +
  • coordinates: 115832..116911
  • length: 1080
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAGGATAGCGATTCTTGGCGCTACTAACATTAAGCATATGTCATTATTATCACATTAT
    TTAAACCACATTGATTTGAATATCAATGAGGTGGACATTATATACACTGACAAATATGAT
    ATCGAAGAACATATCCAAGGCATCAATAATTACTATAAATATAAAGTAGATATTAAAGAA
    GATTGGACATTTATCAAAAAAGCTATTGCTTACTATCGATTTAGGCCATACGCTATGAAA
    ATTCTTAAAGAAAATCATTATGATTTTGTCATAGTATGGGGAAGTTATACAGGACACTTA
    TTTAAAAGTTTTTTAGAAAAACACTATAAAAATAAATTCATTTTAAATATAAGGGACTAC
    TTTTTTGAAAATAATAAAATTATTAAGTATAGAATGAAAAAAATCGTTGATGCTAGCAGG
    CTGACAACATTATCTTCAGAAGGTTTTCTTAAATTTTTACCTAAATCTGAAAAATATAGA
    ATTATTTATAGTTATAACATGAGTATTATTAGAGAAAGTAATGTAACCGATGGATTTAAA
    AAAAGATGGCCAATTAATATAGGTTTTATTGGTAATGTTAGATTTAATGAGATAAATCAA
    AAATTGATAAAGGAACTGGCAAATGATTCAAGGTTCCATATGCAATATTTTGGAACAGGG
    TCGGAAAAATTAGAAGTCTTTGCTCGAGAAAATTTTATTAATAATATTACATTTTCTGGC
    GGCTTTGACTTGAAAGAAACACCGAAATATTTAAATGAAATTGATATACTTAATAATTTG
    TTTGGTAATCAAAATATTGCTTTAGATACTGCTTTATCCATAAGAATGTATTATGCGTTG
    TTTTTAAACAAACCTATTATTACAACAGACGATACATTCACCGCTACAGAAGCTAATAAA
    TTCGGACTGGGTTTTAGTATTAATCCAGAAAATTTAAAAGGTATTGGTGATGAATTGATG
    GATTGGTATAACAATTTGGATGTAATGGACATTAATCATAAAAGAGAAGCTTATAGAAAC
    GATGTAATTGAAAATAATAAACAGTTCTATCAAGAGATAGGCAGGATATTTAATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000099
  • symbol: Cap8H
  • description: type 8 capsular polysaccharide synthesis protein Cap8H
  • length: 359
  • theoretical pI: 9.00787
  • theoretical MW: 42668.5
  • GRAVY: -0.423955

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    PDDEXK (CL0236) CdiA_C_tRNase; CdiA C-terminal tRNase domain (PF18664; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0638
    • Cytoplasmic Membrane Score: 0.7792
    • Cell wall & surface Score: 0.0008
    • Extracellular Score: 0.1562
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.013522
    • TAT(Tat/SPI): 0.0001
    • LIPO(Sec/SPII): 0.001069
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRIAILGATNIKHMSLLSHYLNHIDLNINEVDIIYTDKYDIEEHIQGINNYYKYKVDIKEDWTFIKKAIAYYRFRPYAMKILKENHYDFVIVWGSYTGHLFKSFLEKHYKNKFILNIRDYFFENNKIIKYRMKKIVDASRLTTLSSEGFLKFLPKSEKYRIIYSYNMSIIRESNVTDGFKKRWPINIGFIGNVRFNEINQKLIKELANDSRFHMQYFGTGSEKLEVFARENFINNITFSGGFDLKETPKYLNEIDILNNLFGNQNIALDTALSIRMYYALFLNKPIITTDDTFTATEANKFGLGFSINPENLKGIGDELMDWYNNLDVMDINHKREAYRNDVIENNKQFYQEIGRIFNE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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