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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000099
- pan locus tag?: SAUPAN000983000
- symbol: cap8H
- pan gene symbol?: cap8H
- synonym:
- product: type 8 capsular polysaccharide synthesis protein Cap8H
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000099
- symbol: cap8H
- product: type 8 capsular polysaccharide synthesis protein Cap8H
- replicon: chromosome
- strand: +
- coordinates: 115832..116911
- length: 1080
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGAGGATAGCGATTCTTGGCGCTACTAACATTAAGCATATGTCATTATTATCACATTAT
TTAAACCACATTGATTTGAATATCAATGAGGTGGACATTATATACACTGACAAATATGAT
ATCGAAGAACATATCCAAGGCATCAATAATTACTATAAATATAAAGTAGATATTAAAGAA
GATTGGACATTTATCAAAAAAGCTATTGCTTACTATCGATTTAGGCCATACGCTATGAAA
ATTCTTAAAGAAAATCATTATGATTTTGTCATAGTATGGGGAAGTTATACAGGACACTTA
TTTAAAAGTTTTTTAGAAAAACACTATAAAAATAAATTCATTTTAAATATAAGGGACTAC
TTTTTTGAAAATAATAAAATTATTAAGTATAGAATGAAAAAAATCGTTGATGCTAGCAGG
CTGACAACATTATCTTCAGAAGGTTTTCTTAAATTTTTACCTAAATCTGAAAAATATAGA
ATTATTTATAGTTATAACATGAGTATTATTAGAGAAAGTAATGTAACCGATGGATTTAAA
AAAAGATGGCCAATTAATATAGGTTTTATTGGTAATGTTAGATTTAATGAGATAAATCAA
AAATTGATAAAGGAACTGGCAAATGATTCAAGGTTCCATATGCAATATTTTGGAACAGGG
TCGGAAAAATTAGAAGTCTTTGCTCGAGAAAATTTTATTAATAATATTACATTTTCTGGC
GGCTTTGACTTGAAAGAAACACCGAAATATTTAAATGAAATTGATATACTTAATAATTTG
TTTGGTAATCAAAATATTGCTTTAGATACTGCTTTATCCATAAGAATGTATTATGCGTTG
TTTTTAAACAAACCTATTATTACAACAGACGATACATTCACCGCTACAGAAGCTAATAAA
TTCGGACTGGGTTTTAGTATTAATCCAGAAAATTTAAAAGGTATTGGTGATGAATTGATG
GATTGGTATAACAATTTGGATGTAATGGACATTAATCATAAAAGAGAAGCTTATAGAAAC
GATGTAATTGAAAATAATAAACAGTTCTATCAAGAGATAGGCAGGATATTTAATGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000099
- symbol: Cap8H
- description: type 8 capsular polysaccharide synthesis protein Cap8H
- length: 359
- theoretical pI: 9.00787
- theoretical MW: 42668.5
- GRAVY: -0.423955
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: PDDEXK (CL0236) CdiA_C_tRNase; CdiA C-terminal tRNase domain (PF18664; HMM-score: 9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0638
- Cytoplasmic Membrane Score: 0.7792
- Cell wall & surface Score: 0.0008
- Extracellular Score: 0.1562
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013522
- TAT(Tat/SPI): 0.0001
- LIPO(Sec/SPII): 0.001069
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MRIAILGATNIKHMSLLSHYLNHIDLNINEVDIIYTDKYDIEEHIQGINNYYKYKVDIKEDWTFIKKAIAYYRFRPYAMKILKENHYDFVIVWGSYTGHLFKSFLEKHYKNKFILNIRDYFFENNKIIKYRMKKIVDASRLTTLSSEGFLKFLPKSEKYRIIYSYNMSIIRESNVTDGFKKRWPINIGFIGNVRFNEINQKLIKELANDSRFHMQYFGTGSEKLEVFARENFINNITFSGGFDLKETPKYLNEIDILNNLFGNQNIALDTALSIRMYYALFLNKPIITTDDTFTATEANKFGLGFSINPENLKGIGDELMDWYNNLDVMDINHKREAYRNDVIENNKQFYQEIGRIFNE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)