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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 03-AUG-2016

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02121
  • pan locus tag?: SAUPAN004932000
  • symbol: SAOUHSC_02121
  • pan gene symbol?: camS
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_02121
  • symbol: SAOUHSC_02121
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1993500..1994699
  • length: 1200
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 3921192 NCBI
  • RefSeq: YP_500612 NCBI
  • BioCyc: G1I0R-2008 BioCyc
  • MicrobesOnline: 1290568 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAGCGTACATTAGTATTATTGATTACAGCTATCTTTATACTCGCTGCTTGTGGTAAC
    CATAAGGATGACCAGGCTGGAAAAGATAATCAAAAACATAACAATAGTTCAAATCAAGTA
    AAAGAAATTGCAACGGATAAAAATGTACAAGGTGATAACTATCGTACATTGTTACCATTT
    AAAGAAAGCCAGGCAAGAGGACTTTTACAAGATAACATGGCAAATAGTTATAATGGCGGC
    GACTTTGAAGATGGTTTATTGAACTTAAGTAAAGAAGTATTTCCAACAGATAAATATTTG
    TATCAAGATGGTCAATTTTTGGACAAGAAAACAATTAATGCCTATTTAAATCCTAAGTAT
    ACAAAACGTGAAATCGATAAAATGTCTGAAAAAGATAAAAAAGACAAGAAAGCGAATGAA
    AATTTAGGACTTAATCCATCACACGAAGGTGAAACAGATCCTGAAAAGATTGCAGAAAAA
    TCACCAGCCTATTTATCTAACATTTTAGAGCAAGATTTTTATGGTGGTGGAGATACAAAA
    GGTAAGAATATTAAAGGTATGACGATTGGTTTAGCTATGAATAGTGTTTATTACTATAAA
    AAAGAAAAAGATGGATCGACTTTTAGTAAAAAACTAGATGATAGCGAAGTTAAAAAGCAA
    GGTAAACAAATGGCTAGTGAGATATTATCAAGGTTACGTGAAAATGATGATTTAAAAGAT
    ATACCAATTCATTTTGCAATTTATAAGCAATCAAGTGAAGATTCAATCACACCAGGTGAA
    TTTATCACTCAAGCGACTGCAGAAAAGAGTCAAACAAAGCTTAATGAATGGCATAATATC
    AATGAAAAATCAGCTTTATTACCTTCTTCAACAGCAGCAGATTATGATGAAAATTTAAAT
    AATAATTTCAAGCAATTTAATGATAATTTGCAATCATATTTTTCTAATTTCACACAAGCA
    GTAGGGAAAGTTAAATTTGTTGATAAAAAGCCACAACGATTAGTAGTAGATTTACCAATC
    GATTACTATGGACAAGCTGAAACAATTGGTATTACACAGTACGTTACTGAACAAGCGAAT
    AAATATTTCGATAAAATCGATAACTATGAAATTCGTATTAAAGATGGTAACCAACCACGT
    GCTTTAATTAGTAAGACAAAAGATGACAAAGAACCGCAAGTTCATATTTACAGTAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02121
  • symbol: SAOUHSC_02121
  • description: hypothetical protein
  • length: 399
  • theoretical pI: 6.29166
  • theoretical MW: 45380.3
  • GRAVY: -0.927569

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 12.9)
  • TheSEED  :
    • Putative pheromone cAM373 precursor lipoprotein CamS
    Regulation and Cell signaling Regulation and Cell signaling - no subcategory Sex pheromones in Enterococcus faecalis and other Firmicutes  Putative pheromone cAM373 precursor lipoprotein CamS
  • ⊞PFAM:
    CamS-like (CL0878) CamS; CamS sex pheromone cAM373 precursor (PF07537; HMM-score: 372.9)
    and 4 more
    no clan defined DUF6491; Family of unknown function (DUF6491) (PF20101; HMM-score: 14.5)
    AAR2_1st; AAR2 N-terminal domain (PF20981; HMM-score: 13.7)
    IBIN; Induced by infection (PF22859; HMM-score: 11.9)
    LppaM (CL0421) LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site (PF08139; HMM-score: 8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.8944
    • Cell wall & surface Score: 0.018
    • Extracellular Score: 0.0872
  • ⊞LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: ILAACGN
  • ⊞SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000545
    • TAT(Tat/SPI): 0.000098
    • LIPO(Sec/SPII): 0.999003
    • Cleavage Site: CS pos: 17-18. LAA-CG. Pr: 0.9998
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 88195802 NCBI
  • RefSeq: YP_500612 NCBI
  • UniProt: Q2FWY6 UniProt
  • STRING: 93061.SAOUHSC_02121 STRING

⊟Protein sequence[edit | edit source]

  • MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGSTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [1] [2]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: SAOUHSC_02121 < SAOUHSC_02122 < SAOUHSC_02123 < SAOUHSC_02124
    predicted SigA promoter [3] : SAOUHSC_02121 < SAOUHSC_02122 < SAOUHSC_02123 < SAOUHSC_02124
    predicted SigA promoter [3] : SAOUHSC_02121 < SAOUHSC_02122 < SAOUHSC_02123 < SAOUHSC_02124 < SAOUHSC_02125 < S834 < SAOUHSC_02126 < S835

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser:  [3] 
    Expression Data Browser
    ⊟Multi-gene expression profiles



    Click on any data point to display a description of the corresponding condition!

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: no data available

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. ↑ Jump up to: 3.0 3.1 3.2 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_02121&oldid=73724"
  • This page was last edited on 10 March 2016, at 22:26.
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