From AureoWiki
Jump to navigation Jump to search

NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02124
  • pan locus tag?: SAUPAN004935000
  • symbol: SAOUHSC_02124
  • pan gene symbol?: pcrB
  • synonym:
  • product: geranylgeranylglyceryl phosphate synthase-like protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_02124
  • symbol: SAOUHSC_02124
  • product: geranylgeranylglyceryl phosphate synthase-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1998908..1999600
  • length: 693
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGTATGACATTAAAAAATGGCGCCATATTTTTAAATTAGACCCAGCTAAACATATTTCA
    GATGATGATTTAGATGCGATTTGTATGTCTCAAACAGATGCAATTATGATTGGTGGAACT
    GATGACGTTACTGAAGATAATGTCATTCATTTAATGAGCAGAGTAAGAAGATACCCATTG
    CCTTTAGTACTTGAAATATCAAACATCGAAAGTGTAATGCCTGGTTTTGATTTTTATTTT
    GTACCTACAGTACTGAACAGTACAGATGTTGTATTTCACAATGGTACATTATTAGAAGCG
    CTTAAAACATATGGACATAGTATAGATTTTGAGGAAGTAATATTTGAAGGGTATGTCGTG
    TGCAATGCTGATAGCAAAGTGGCAAAACATACCAAAGCAAATACAGATTTAACAACAGAA
    GATTTAGAAGCATATGCCCAAATGGTCAATCATATGTATCGATTACCGGTTATGTATATA
    GAGTATAGTGGCATTTATGGCGACGTATCAAAGGTTCAAGCTGTCTCAGAACATCTAACA
    GAAACGCAACTTTTTTATGGTGGCGGTATTTCCTCAGAACAACAAGCGACAGAGATGGCA
    GCTATTGCAGATACAATTATCGTCGGTGATATTATTTATAAAGATATTAAAAAAGCTTTA
    AAAACAGTAAAAATAAAGGAGTCTAGTAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    693

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_02124
  • symbol: SAOUHSC_02124
  • description: geranylgeranylglyceryl phosphate synthase-like protein
  • length: 230
  • theoretical pI: 4.67385
  • theoretical MW: 25888.4
  • GRAVY: -0.0947826

⊟Function[edit | edit source]

  • reaction:
    EC 2.5.1.n9?  ExPASy
    Heptaprenylglyceryl phosphate synthase All-trans-heptaprenyl diphosphate + sn-glycerol 1-phosphate = diphosphate + sn-3-O-(all-trans-heptaprenyl)glycerol 1-phosphate
  • TIGRFAM:
    phosphoglycerol geranylgeranyltransferase (TIGR04146; EC 2.5.1.41; HMM-score: 245.3)
    geranylgeranylglyceryl phosphate synthase family protein (TIGR01768; EC 2.5.1.-; HMM-score: 204.4)
    and 3 more
    phosphoglycerol geranylgeranyltransferase, putative (TIGR04147; EC 2.5.1.41; HMM-score: 187.6)
    phosphoglycerol geranylgeranyltransferase (TIGR01769; EC 2.5.1.41; HMM-score: 46.9)
    HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase (TIGR02244; HMM-score: 17.3)
  • TheSEED  :
    • Geranylgeranylglyceryl phosphate synthase-like protein YerE
    Fatty Acids, Lipids, and Isoprenoids Isoprenoids Archaeal lipids  (S)-3-O-geranylgeranylglyceryl phosphate synthase
  • PFAM:
    TIM_barrel (CL0036) PcrB; PcrB family (PF01884; HMM-score: 233)
    and 4 more
    Trp_syntA; Tryptophan synthase alpha chain (PF00290; HMM-score: 21.7)
    HAD (CL0137) 5_nucleotid; 5' nucleotidase family (PF05761; HMM-score: 13.8)
    TIM_barrel (CL0036) His_biosynth; Histidine biosynthesis protein (PF00977; HMM-score: 13.3)
    no clan defined Pox_H7; Late protein H7 (PF04787; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mg2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002072
    • TAT(Tat/SPI): 0.000145
    • LIPO(Sec/SPII): 0.000433
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVVFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas [1] [2]
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Maren Depke, Stephan Michalik, Alexander Rabe, Kristin Surmann, Lars Brinkmann, Nico Jehmlich, Jörg Bernhardt, Michael Hecker, Bernd Wollscheid, Zhi Sun, Robert L Moritz, Uwe Völker, Frank Schmidt
    A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies.
    Proteomics: 2015, 15(21);3648-61
    [PubMed:26224020] [WorldCat.org] [DOI] (I p)
  2. ↑ Stephan Michalik, Maren Depke, Annette Murr, Manuela Gesell Salazar, Ulrike Kusebauch, Zhi Sun, Tanja C Meyer, Kristin Surmann, Henrike Pförtner, Petra Hildebrandt, Stefan Weiss, Laura Marcela Palma Medina, Melanie Gutjahr, Elke Hammer, Dörte Becher, Thomas Pribyl, Sven Hammerschmidt, Eric W Deutsch, Samuel L Bader, Michael Hecker, Robert L Moritz, Ulrike Mäder, Uwe Völker, Frank Schmidt
    A global Staphylococcus aureus proteome resource applied to the in vivo characterization of host-pathogen interactions.
    Sci Rep: 2017, 7(1);9718
    [PubMed:28887440] [WorldCat.org] [DOI] (I e)
  3. ↑ 3.0 3.1 3.2 Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

Harald Guldan, Frank-Michael Matysik, Marco Bocola, Reinhard Sterner, Patrick Babinger
Functional assignment of an enzyme that catalyzes the synthesis of an archaea-type ether lipid in bacteria.
Angew Chem Int Ed Engl: 2011, 50(35);8188-91
[PubMed:21761520] [WorldCat.org] [DOI] (I p)S Iordanescu
Characterization of the Staphylococcus aureus chromosomal gene pcrA, identified by mutations affecting plasmid pT181 replication.
Mol Gen Genet: 1993, 241(1-2);185-92
[PubMed:8232203] [WorldCat.org] [DOI] (P p)

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAOUHSC_02124&oldid=93905"