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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1964 [new locus tag: SACOL_RS10270 ]
  • pan locus tag?: SAUPAN004932000
  • symbol: camS
  • pan gene symbol?: camS
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1964 [new locus tag: SACOL_RS10270 ]
  • symbol: camS
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2025480..2026679
  • length: 1200
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAGCGTACATTAGTATTATTGATTACAGCTATCTTTATACTCGCTGCTTGTGGTAAC
    CATAAGGATGACCAGGCTGGAAAAGATAATCAAAAACATAACAATAGTTCAAATCAAGTA
    AAAGAAATTGCAACGGATAAAAATGTACAAGGTGATAACTATCGTACATTGTTACCATTT
    AAAGAAAGCCAGGCAAGAGGACTTTTACAAGATAACATGGCAAATAGTTATAATGGCGGC
    GACTTTGAAGATGGTTTATTGAACTTAAGTAAAGAAGTATTTCCAACAGATAAATATTTG
    TATCAAGATGGTCAATTTTTGGACAAGAAAACAATTAATGCCTATTTAAATCCTAAGTAT
    ACAAAACGTGAAATCGATAAAATGTCTGAAAAAGATAAAAAAGACAAGAAAGCGAATGAA
    AATTTAGGACTTAATCCATCACACGAAGGTGAAACAGATCCTGAAAAGATTGCAGAAAAA
    TCACCAGCCTATTTATCTAACATTTTAGAGCAAGATTTTTATGGTGGTGGAGATACAAAA
    GGTAAGAATATTAAAGGTATGACGATTGGTTTAGCTATGAATAGTGTTTATTACTATAAA
    AAAGAAAAAGATGGATCGACTTTTAGTAAAAAACTAGATGATAGCGAAGTTAAAAAGCAA
    GGTAAACAAATGGCTAGTGAGATATTATCAAGGTTACGTGAAAATGATGATTTAAAAGAT
    ATACCAATTCATTTTGCAATTTATAAGCAATCAAGTGAAGATTCAATCACACCAGGTGAA
    TTTATCACTCAAGCGACTGCAGAAAAGAGTCAAACAAAGCTTAATGAATGGCATAATATC
    AATGAAAAATCAGCTTTATTACCTTCTTCAACAGCAGCAGATTATGATGAAAATTTAAAT
    AATAATTTCAAGCAATTTAATGATAATTTGCAATCATATTTTTCTAATTTCACACAAGCA
    GTAGGGAAAGTTAAATTTGTTGATAAAAAGCCACAACGATTAGTAGTAGATTTACCAATC
    GATTACTATGGACAAGCTGAAACAATTGGTATTACACAGTACGTTACTGAACAAGCGAAT
    AAATATTTCGATAAAATCGATAACTATGAAATTCGTATTAAAGATGGTAACCAACCACGT
    GCTTTAATTAGTAAGACAAAAGATGACAAAGAACCGCAAGTTCATATTTACAGTAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1964 [new locus tag: SACOL_RS10270 ]
  • symbol: CamS
  • description: hypothetical protein
  • length: 399
  • theoretical pI: 6.29166
  • theoretical MW: 45380.3
  • GRAVY: -0.927569

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 12.9)
  • TheSEED  :
    • Putative pheromone cAM373 precursor lipoprotein CamS
    Regulation and Cell signaling Regulation and Cell signaling - no subcategory Sex pheromones in Enterococcus faecalis and other Firmicutes  Putative pheromone cAM373 precursor lipoprotein CamS
  • PFAM:
    CamS-like (CL0878) CamS; CamS sex pheromone cAM373 precursor (PF07537; HMM-score: 372.9)
    and 4 more
    no clan defined DUF6491; Family of unknown function (DUF6491) (PF20101; HMM-score: 14.5)
    AAR2_1st; AAR2 N-terminal domain (PF20981; HMM-score: 13.7)
    IBIN; Induced by infection (PF22859; HMM-score: 11.9)
    LppaM (CL0421) LPAM_1; Prokaryotic membrane lipoprotein lipid attachment site (PF08139; HMM-score: 8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0004
    • Cytoplasmic Membrane Score: 0.8944
    • Cell wall & surface Score: 0.018
    • Extracellular Score: 0.0872
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: ILAACGN
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000545
    • TAT(Tat/SPI): 0.000098
    • LIPO(Sec/SPII): 0.999003
    • Cleavage Site: CS pos: 17-18. LAA-CG. Pr: 0.9998
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGSTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Lipoprotein [1] [2] [3] [4]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Kristina Hempel, Jan Pané-Farré, Andreas Otto, Susanne Sievers, Michael Hecker, Dörte Becher
    Quantitative cell surface proteome profiling for SigB-dependent protein expression in the human pathogen Staphylococcus aureus via biotinylation approach.
    J Proteome Res: 2010, 9(3);1579-90
    [PubMed:20108986] [WorldCat.org] [DOI] (I p)
  3. ↑ Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
    Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
    J Proteome Res: 2011, 10(4);1657-66
    [PubMed:21323324] [WorldCat.org] [DOI] (I p)
  4. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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