PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

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⊟Summary

• organism: Staphylococcus aureus N315
locus tag: SA1773 [new locus tag: SA_RS10195 ]
pan locus tag^?: SAUPAN005063000
symbol: SA1773
pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA1773 [new locus tag: SA_RS10195 ]
• symbol: SA1773
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2026271..2026555
• length: 285
• essential: no DEG

⊟Accession numbers

• Gene ID: 1124662 NCBI
• RefSeq: NP_375071 NCBI
• BioCyc: see SA_RS10195
• MicrobesOnline: 104097 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  
  ATGGTGAAATTTAAAGTTGTTAGAGCTTTTAAAGACATAGAGCACAATCAACACAAGTAC
  AAAGTAGGGGAGTTGTATCCAGCTGAAGGGTATAACAATCCTCGTGTTGAATTGTTGACA
  AATCAAATCAAAAATAAGTACGACAAAGTTTATATCGTACCTTTAGATAAGCTGACAAAA
  CAAGAATTATTAGAACTATGCGAATCATTACAAAAAAAAGCGTCTAGTTCAATGGTTAAA
  AGTGAAATCGTCGACTTATTGAATGGTGAAGACAATGACGATTGA
  60
  120
  180
  240
  285
  

⊟Protein

⊟General

• locus tag: SA1773 [new locus tag: SA_RS10195 ]
• symbol: SA1773
• description: hypothetical protein
• length: 94
• theoretical pI: 6.52638
• theoretical MW: 10928.5
• GRAVY: -0.676596

⊟Function

• TIGRFAM:
  Metabolism Transport and binding proteins Amino acids, peptides and amines protein translocation protein, Sec62 family (TIGR00869; HMM-score: 16.4)
• TheSEED  :
  • Phage transcriptional terminator
• ⊞PFAM:
  no clan defined HEXIM; Hexamethylene bis-acetamide-inducible protein (PF15313; HMM-score: 15)
  and 2 more
  Beta_propeller (CL0186) DPPIV_N; Dipeptidyl peptidase IV (DPP IV) N-terminal region (PF00930; HMM-score: 11.6)
  PLP_aminotran (CL0061) Aminotran_3; Aminotransferase class-III (PF00202; HMM-score: 10.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• ⊞PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• ⊞DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9602
  • Cytoplasmic Membrane Score: 0.0015
  • Cell wall & surface Score: 0.0029
  • Extracellular Score: 0.0354
• ⊞LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• ⊞SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007371
  • TAT(Tat/SPI): 0.000159
  • LIPO(Sec/SPII): 0.001402
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15927538 NCBI
• RefSeq: NP_375071 NCBI
• UniProt: A0A0H3JLW2 UniProt

⊟Protein sequence

• MVKFKVVRAFKDIEHNQHKYKVGELYPAEGYNNPRVELLTNQIKNKYDKVYIVPLDKLTKQELLELCESLQKKASSSMVKSEIVDLLNGEDNDD

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SA1768 < SA1769 < SA1770 < SA1771 < SA1772 < SA1773 < SA1774 < SA1775 < SA1776 < SA1777 < SA1778

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊞Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊞Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications