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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • pan locus tag?: SAUPAN003364000
  • symbol: NWMN_RS05910
  • pan gene symbol?: isdF
  • synonym:
  • product: hemin ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • symbol: NWMN_RS05910
  • product: hemin ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1148125..1149093
  • length: 969
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1148125..1149093) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1045

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGATGATAAAAAATAAAAAGAAACTACTATTTTTATGTTTGTTAGTCATTTTAATCGCA
    ACTGCTTATATTTCGTTTGTAACCGGTACAATTAAATTGTCATTTAATGACCTATTTACA
    AAATTTACAACTGGTAGCAATGAAGCAGTGGATTCAATCATTGATTTGCGATTGCCACGT
    ATATTAATTGCATTGATGGTTGGCGCAATGTTAGCAGTTTCTGGAGCATTATTACAAGCA
    GCACTACAAAATCCTTTGGCAGAGGCGAATATCATTGGCGTTTCCTCAGGTGCACTTATA
    ATGAGAGCACTTTGTATGTTGTTTATTCCACAATTGTACTTTTACTTACCATTATTAAGT
    TTTATTGGAGGTTTAATACCATTTTTAATAATTATATTGTTGCATTCTAAATTTAGATTC
    AATGCTGTAAGTATGATATTAGTAGGTGTTGCGTTATTCGTATTATTAAATGGTGTTTTA
    GAAATTTTAACTCAAAACCCTTTAATGAAAATTCCTCAAGGCTTAACAATGAAAATATGG
    AGCGACGTATACATATTAGCAGTATCAGCATTATTGGGATTAATATTAACATTACTATTG
    TCCCCTAAATTGAATTTACTAAATTTAGACGACATACAAGCGCGAAGTATCGGTTTTAAT
    ATTGATCGTTACAGATGGTTAACAGGTTTATTAGCAGTATTTTTAGCAAGTGCAACTGTT
    GCGATTGTTGGACAACTAGCCTTTTTAGGTATTATTGTGCCACATGTGGTTAGAAAGCTA
    GTTGGGGGCAATTACAGAGTACTTATTCCGTTTTCTACAGTTATTGGTGCATGGCTATTG
    TTAGTGGCTGATTTATTAGGACGAGTGATACAGCCTCCTTTAGAAATTCCAGCCAATGCT
    ATTTTAATGATTGTCGGTGGTCCAATGCTAATTTACTTAATTTGTCAAAGTCAACGAAAT
    CGAATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    969

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • symbol: NWMN_RS05910
  • description: hemin ABC transporter permease
  • length: 322
  • theoretical pI: 10.3065
  • theoretical MW: 35174.8
  • GRAVY: 1.10248

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 124.9)
  • TheSEED: see NWMN_1045
  • ⊞⊞PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 246.6)
    and 1 more
    no clan defined Chloroa_b-bind; Chlorophyll A-B binding protein (PF00504; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • ⊞⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • LocateP:
  • ⊞⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.175429
    • TAT(Tat/SPI): 0.000575
    • LIPO(Sec/SPII): 0.066571
  • predicted transmembrane helices (TMHMM): 8

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_RS05910&oldid=73050"
Insert paragraph

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • pan locus tag?: SAUPAN003364000
  • symbol: NWMN_RS05910
  • pan gene symbol?: isdF
  • synonym:
  • product: hemin ABC transporter permease

Insert paragraph

⊟Genome View[edit | edit source]

Insert paragraph

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • symbol: NWMN_RS05910
  • product: hemin ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 1148125..1149093
  • length: 969
  • essential: unknown other strains

Insert paragraph

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1148125..1149093) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1045

Insert paragraph

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGATGATAAAAAATAAAAAGAAACTACTATTTTTATGTTTGTTAGTCATTTTAATCGCA
    ACTGCTTATATTTCGTTTGTAACCGGTACAATTAAATTGTCATTTAATGACCTATTTACA
    AAATTTACAACTGGTAGCAATGAAGCAGTGGATTCAATCATTGATTTGCGATTGCCACGT
    ATATTAATTGCATTGATGGTTGGCGCAATGTTAGCAGTTTCTGGAGCATTATTACAAGCA
    GCACTACAAAATCCTTTGGCAGAGGCGAATATCATTGGCGTTTCCTCAGGTGCACTTATA
    ATGAGAGCACTTTGTATGTTGTTTATTCCACAATTGTACTTTTACTTACCATTATTAAGT
    TTTATTGGAGGTTTAATACCATTTTTAATAATTATATTGTTGCATTCTAAATTTAGATTC
    AATGCTGTAAGTATGATATTAGTAGGTGTTGCGTTATTCGTATTATTAAATGGTGTTTTA
    GAAATTTTAACTCAAAACCCTTTAATGAAAATTCCTCAAGGCTTAACAATGAAAATATGG
    AGCGACGTATACATATTAGCAGTATCAGCATTATTGGGATTAATATTAACATTACTATTG
    TCCCCTAAATTGAATTTACTAAATTTAGACGACATACAAGCGCGAAGTATCGGTTTTAAT
    ATTGATCGTTACAGATGGTTAACAGGTTTATTAGCAGTATTTTTAGCAAGTGCAACTGTT
    GCGATTGTTGGACAACTAGCCTTTTTAGGTATTATTGTGCCACATGTGGTTAGAAAGCTA
    GTTGGGGGCAATTACAGAGTACTTATTCCGTTTTCTACAGTTATTGGTGCATGGCTATTG
    TTAGTGGCTGATTTATTAGGACGAGTGATACAGCCTCCTTTAGAAATTCCAGCCAATGCT
    ATTTTAATGATTGTCGGTGGTCCAATGCTAATTTACTTAATTTGTCAAAGTCAACGAAAT
    CGAATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    969

Insert paragraph

This data comes from external databases and cannot be edited.

Insert paragraph

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS05910 [old locus tag: NWMN_1045 ]
  • symbol: NWMN_RS05910
  • description: hemin ABC transporter permease
  • length: 322
  • theoretical pI: 10.3065
  • theoretical MW: 35174.8
  • GRAVY: 1.10248

Insert paragraph

⊟Function[edit | edit source]

  • TIGRFAM:
    proposed F420-0 ABC transporter, permease protein (TIGR03869; HMM-score: 124.9)
  • TheSEED: see NWMN_1045
  • ⊞PFAM:
    Membrane_trans (CL0142) FecCD; FecCD transport family (PF01032; HMM-score: 246.6)
    and 1 more
    no clan defined Chloroa_b-bind; Chlorophyll A-B binding protein (PF00504; HMM-score: 11.6)

Insert paragraph

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Insert paragraph

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • ⊞DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0002
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.175429
    • TAT(Tat/SPI): 0.000575
    • LIPO(Sec/SPII): 0.066571
  • predicted transmembrane helices (TMHMM): 8

Insert paragraph

⊟Accession numbers[edit | edit source]

Insert paragraph

⊟Protein sequence[edit | edit source]

  • MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLFTKFTTGSNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI

Insert paragraph

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Insert paragraph

⊟Expression & Regulation[edit | edit source]

Insert paragraph

⊟Operon[edit | edit source]

Insert paragraph

⊟Regulation[edit | edit source]

Insert paragraph

⊟Transcription pattern[edit | edit source]

Insert paragraph

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Insert paragraph

⊟Protein stability[edit | edit source]

  • half-life: no data available

Insert paragraph

⊞Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

Insert paragraph

⊟Relevant publications[edit | edit source]

Insert paragraph