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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS08220 [old locus tag: NWMN_1457 ]
  • pan locus tag?: SAUPAN004135000
  • symbol: NWMN_RS08220
  • pan gene symbol?: zur
  • synonym:
  • product: transcriptional repressor

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS08220 [old locus tag: NWMN_1457 ]
  • symbol: NWMN_RS08220
  • product: transcriptional repressor
  • replicon: chromosome
  • strand: -
  • coordinates: 1624813..1625223
  • length: 411
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1624813..1625223) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1457

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAATACAAATGATGCTATTAAAATTTTAAAAGAGAACGGTTTAAAATATACAGATAAA
    CGTAAAGATATGTTAGATATTTTTGTCGAAGAAGATAAGTATATAAACGCAAAGTATATA
    CAACAAGTTATGGATGAAAATTATCCTGGAATTTCATTCGACACAATATATAGAAACCTG
    CACTTATTTAAAGATTTAGGAATTATTGAAAATACAGAACTTGATGGTGAAATGAAGTTT
    AGAATCGCTTGTACAAACCATCATCATCATCATTTTATCTGTGAAAAGTGTGGAGATACA
    AAGGTAATAGATTATTGTCCAATAGATCAGATAAAATTATCACTACCTGGTGTTAATATT
    CACAAACACAAACTTGAAGTTTATGGTGTATGTGAGTCTTGCCAAGATTAA
    60
    120
    180
    240
    300
    360
    411

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS08220 [old locus tag: NWMN_1457 ]
  • symbol: NWMN_RS08220
  • description: transcriptional repressor
  • length: 136
  • theoretical pI: 6.07084
  • theoretical MW: 15922.1
  • GRAVY: -0.516912

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_1457
  • ⊞PFAM:
    HTH (CL0123) FUR; Ferric uptake regulator family (PF01475; HMM-score: 114)
    and 3 more
    MJ1010-like_2nd; Uncharacterized ATP-binding protein MJ1010-like, C-terminal domain (PF21690; HMM-score: 14.4)
    NSUN_ferredox (CL0795) NSUN5_fdxn-like; NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain (PF21148; HMM-score: 13.6)
    no clan defined F-protein; Negative factor, (F-Protein) or Nef (PF00469; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • genes regulated by Zur*, TF important in Zinc homeostasis: see NWMN_1457

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8523
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.1475
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002478
    • TAT(Tat/SPI): 0.000134
    • LIPO(Sec/SPII): 0.000435
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNTNDAIKILKENGLKYTDKRKDMLDIFVEEDKYINAKYIQQVMDENYPGISFDTIYRNLHLFKDLGIIENTELDGEMKFRIACTNHHHHHFICEKCGDTKVIDYCPIDQIKLSLPGVNIHKHKLEVYGVCESCQD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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