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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS06480 [old locus tag: SACOL1269 ]
  • pan locus tag?: SAUPAN003550000
  • symbol: SACOL_RS06480
  • pan gene symbol?: xerC
  • synonym:
  • product: tyrosine recombinase XerC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS06480 [old locus tag: SACOL1269 ]
  • symbol: SACOL_RS06480
  • product: tyrosine recombinase XerC
  • replicon: chromosome
  • strand: +
  • coordinates: 1280539..1281435
  • length: 897
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1280539..1281435) NCBI
  • BioCyc: SACOL_RS06480 BioCyc
  • MicrobesOnline: see SACOL1269

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    TTGAATCATATTCAAGATGCGTTTTTAAATACATTGAAAGTTGAACGGAATTTTTCGGAA
    CACACATTGAAATCATATCAAGATGACTTAATTCAGTTTAATCAATTTTTAGAACAAGAA
    CATTTAGAGTTGAATACTTTTGAATACAGAGATGCTAGAAATTATTTGAGCTATTTATAT
    TCAAATCATTTGAAAAGAACATCTGTTTCTCGTAAAATCTCAACGTTAAGAACTTTCTAT
    GAATATTGGATGACGCTTGATGAGAACATTATTAATCCATTTGTTCAATTAGTACATCCG
    AAAAAAGAAAAATATCTTCCGCAATTCTTTTACGAAGAAGAAATGGAAGCGTTATTCAAA
    ACTGTAGAAGAGGACACTTCAAAAAATTTACGGGATCGAGTTATTCTTGAATTGTTGTAT
    GCTACAGGCATCCGTGTTTCGGAATTAGTAAATATTAAAAAACAAGATATAGATTTTTAC
    GCGAATGGTGTTACCGTATTAGGAAAAGGGAGCAAAGAGCGCTTTGTACCGTTTGGTGCT
    TATTGTAGACAAAGCATCGAAAATTATTTAGAACATTTCAAACCAATTCAGTCATGCAAT
    CATGATTTTCTTATTGTAAATATGAAGGGTGAAGCAATCACTGAACGCGGTGTACGATAT
    GTTTTAAATGATATTGTTAAACGAACAGCAGGCGTAAGTGAGATTCATCCCCACAAGCTC
    AGACATACATTTGCAACGCATTTATTGAATCAAGGTGCAGACCTAAGAACAGTACAATCG
    TTATTAGGTCATGTTAATTTGTCAACAACTGGTAAATATACACACGTATCTAACCAACAA
    TTAAGAAAAGTGTATCTAAATGCACATCCTCGAGCGAAAAAGGAGAATGAAACATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    897

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS06480 [old locus tag: SACOL1269 ]
  • symbol: SACOL_RS06480
  • description: tyrosine recombinase XerC
  • length: 298
  • theoretical pI: 8.5616
  • theoretical MW: 35112.6
  • GRAVY: -0.563423

⊟Function[edit | edit source]

  • ⊞TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerC (TIGR02224; HMM-score: 352.2)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerD (TIGR02225; HMM-score: 298.8)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair integron integrase (TIGR02249; HMM-score: 120.5)
    Genetic information processing Mobile and extrachromosomal element functions Other integron integrase (TIGR02249; HMM-score: 120.5)
  • TheSEED: see SACOL1269
  • ⊞PFAM:
    DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 158.7)
    and 4 more
    l-integrase_N (CL0469) Phage_int_SAM_1; Phage integrase, N-terminal SAM-like domain (PF02899; HMM-score: 64.2)
    Phage_int_SAM_4; Phage integrase, N-terminal SAM-like domain (PF13495; HMM-score: 24.8)
    Phage_int_SAM_5; Phage integrase SAM-like domain (PF13102; HMM-score: 20.7)
    no clan defined ATP-synt_VA_C; C-terminal domain of V and A type ATP synthase (PF22919; HMM-score: 16.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9927
    • Cytoplasmic Membrane Score: 0.0046
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.002
  • LocateP:
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001925
    • TAT(Tat/SPI): 0.000636
    • LIPO(Sec/SPII): 0.000337
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLYSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1269
  • protein localization: see SACOL1269
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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