PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003550000
• symbol^?: xerC
• synonym:
• description^?: tyrosine recombinase XerC

  descriptions from strain specific annotations:

  • tyrosine recombinase XerC
  • site-specific recombinase
  • integrase/recombinase (XerC/CodV family)
  • putative integrase/recombinase
  • site-specific recombinase XerC
  • site-specific recombinase XerC homologue
  • Site-specific tyrosine recombinase
• strand^?: +
• coordinates^?: 3886928..3887824
• synteny block^?: BlockID0026270
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1269 (xerC)
N315:
SA1095 (xerC)
NCTC8325:
SAOUHSC_01224
Newman:
NWMN_1162 (xerC)
USA300_FPR3757:
SAUSA300_1145 (xerC)
04-02981:
SA2981_1210 (xerC)
08BA02176:
C248_1283
11819-97:
MS7_1210 (xerC)
6850:
RSAU_001134 (xerC)
71193:
ST398NM01_1254
ECT-R 2:
ECTR2_1108 (xerC)
ED133:
SAOV_1254
ED98:
SAAV_1226 (xerC)
HO 5096 0412:
SAEMRSA15_10850
JH1:
SaurJH1_1337
JH9:
SaurJH9_1312
JKD6008:
SAA6008_01207 (xerC)
JKD6159:
SAA6159_01107 (xerC)
LGA251:
SARLGA251_11630
M013:
M013TW_1192
MRSA252:
SAR1228
MSHR1132:
SAMSHR1132_10950
MSSA476:
SAS1186
Mu3:
SAHV_1242 (xerC)
Mu50:
SAV1252 (xerC)
MW2:
MW1135 (xerC)
RF122:
SAB1114
ST398:
SAPIG1254 (xerC)
T0131:
SAT0131_01303
TCH60:
HMPREF0772_11978 (xerC)
TW20:
SATW20_12460
USA300_TCH1516:
USA300HOU_1183 (xerC)
VC40:
SAVC_05425

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
  N315            MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLY
  NCTC8325        MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
  Newman          MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
  USA300_FPR3757  MNHIQDAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLY
                  *****:************************************:*:***************
  
  COL             SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
  N315            SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
  NCTC8325        SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
  Newman          SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
  USA300_FPR3757  SNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFK
                  ************************************************************
  
  COL             TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
  N315            TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
  NCTC8325        TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
  Newman          TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
  USA300_FPR3757  TVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGA
                  ************************************************************
  
  COL             YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
  N315            YCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
  NCTC8325        YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
  Newman          YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
  USA300_FPR3757  YCRQSIENYLEHFKPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKL
                  *************************:**********************************
  
  COL             RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
  N315            RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
  NCTC8325        RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
  Newman          RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
  USA300_FPR3757  RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENET
                  **********************************************************