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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus N315
  • locus tag: SA1729 [new locus tag: SA_RS09925 ]
  • pan locus tag?: SAUPAN004946000
  • symbol: SA1729
  • pan gene symbol?: pncB
  • synonym:
  • product: nicotinate phosphoribosyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1729 [new locus tag: SA_RS09925 ]
  • symbol: SA1729
  • product: nicotinate phosphoribosyltransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 1979777..1981246
  • length: 1470
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 1124613 NCBI
  • RefSeq: NP_375020 NCBI
  • BioCyc: see SA_RS09925
  • MicrobesOnline: 104046 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    GTGTACCAATTAGAAGACGACAGTTTAATGTTACATAATGACTTATATCAAATAAATATG
    GCTGAAAGTTATTGGAATGATAATATTCATGAAAAAATGGCTGTATTTGATTTGTATTTT
    AGAAAAATGCCATTTAATAGTGGCTATGCTGTTTTTAATGGTTTAAAACGCGTCATTGAT
    TTTATAGAACATTTTGGATTTTCAGAATCTGATTTGGAATATTTAAAGTCTATTGGCTAC
    AAGGATGATTTCTTATCATATTTAAAAGATTTAAAATTCACAGGAAGCATTCGTTCGATG
    CAAGAAGGCGAATTATGCTTTGGTAACGAACCATTGTTACGCGTAGAAGCACCATTGATT
    CAAGCGCAATTAATAGAAACAATTTTATTAAACATTGTAAATTTCCATACACTAATTACA
    ACAAAGGCTAGTAGAATTCGTCAAATTGCATCAAATGATAAATTAATGGAGTTTGGTACA
    CGTCGTGCGCAAGAAATTGATGCAGCATTGTGGGGCGCTAGAGCTGCTTACATCGGGGGC
    TTTGATTCTACAAGTAATGTTAGGGCAGGTAAATTATTTGGTATACCTGTGTCTGGTACA
    CATGCACACGCATTTGTCCAAACTTATGGAGATGAATATGTTGCCTTCAAAAAATATGCT
    GAAAGACATAAAAATTGTGTGTTCCTAGTAGATACATTCCATACTTTAAAATCTGGCGTG
    CCAAATGCAATAAAAGTTGCAAAAGAATTAGGTGACAAAATTAACTTTGTAGGTATTCGA
    TTGGATTCTGGAGATATCGCTTATTTATCTAAAGAGGCAAGACGTATGCTTGATGAAGCA
    GGATTTACTGAAACTAAAATTATCGCGTCTAATGATTTGGATGAAGAAACGATTACGAGT
    TTGAAAGCACAAGGTGCAAAAGTAGATTCTTGGGGCGTTGGTACAAAGCTGATTACAGGA
    TACGATCAACCAGCATTAGGTGCAGTATATAAACTTGTAGCTATTGAAAATGAAGAGGGT
    TCATATAGTGATCGTATTAAATTATCAAATAACGCTGAAAAGGTTACGACGCCAGGTAAG
    AAAAATGTATATCGCATTATAAACAAGAAAACAGGTAAGGCAGAAGGCGATTATATTACT
    TTGGAAAATGAAAATCCATACGATGAACAACCTTTAAAATTATTCCATCCAGTGCATACT
    TATAAAATGAAATTTATAAAATCTTTCGAAGCCATTGATTTGCATCATAATATTTATGAA
    AATGGTAAATTAGTATATCAAATGCCAACAGAAGATGAATCACGTGAATATTTAGCACAA
    GGATTACAATCTATTTGGGATGAAAATAAGCGTTTCCTTAATCCACAAGAATATCCAGTC
    GATTTAAGCAAGGCATGTTGGGATAATAAACATAAACGTATTTTTGAAGTTGCGGAACAC
    GTTAAGGAGATGGAAGAAGATAATGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1470

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1729 [new locus tag: SA_RS09925 ]
  • symbol: SA1729
  • description: nicotinate phosphoribosyltransferase
  • length: 489
  • theoretical pI: 5.51591
  • theoretical MW: 55920.9
  • GRAVY: -0.44908

⊟Function[edit | edit source]

  • ⊞reaction:
    EC 2.4.2.11?  ExPASy
    Transferred entry: 6.3.4.21
    EC 6.3.4.21?  ExPASy
    Nicotinate phosphoribosyltransferase Nicotinate + 5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O = beta-nicotinate D-ribonucleotide + diphosphate + ADP + phosphate
  • ⊞TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinate phosphoribosyltransferase (TIGR01513; EC 6.3.4.21; HMM-score: 597.1)
    and 1 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pyridine nucleotides nicotinate phosphoribosyltransferase (TIGR01514; EC 6.3.4.21; HMM-score: 64.1)
  • ⊞TheSEED  :
    • Nicotinate phosphoribosyltransferase (EC 6.3.4.21)
    Cofactors, Vitamins, Prosthetic Groups, Pigments NAD and NADP NAD and NADP cofactor biosynthesis global  Nicotinate phosphoribosyltransferase (EC 2.4.2.11)
    and 1 more
    Stress Response Oxidative stress Redox-dependent regulation of nucleus processes  Nicotinate phosphoribosyltransferase (EC 2.4.2.11)
  • ⊞PFAM:
    Hybrid (CL0105) NAPRTase_N; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain (PF17767; HMM-score: 133)
    no clan defined NAPRTase_C; Nicotinate phosphoribosyltransferase C-terminal domain (PF17956; HMM-score: 115.5)
    and 4 more
    TIM_barrel (CL0036) NAPRTase; Nicotinate phosphoribosyltransferase (NAPRTase) family (PF04095; HMM-score: 38.6)
    Hybrid (CL0105) QRPTase_N; Quinolinate phosphoribosyl transferase, N-terminal domain (PF02749; HMM-score: 18.6)
    TIM_barrel (CL0036) Glyco_hydro_59; Glycosyl hydrolase family 59 (PF02057; HMM-score: 15.6)
    no clan defined Rhabdo_glycop_CD; Rhabdovirus spike glycoprotein G central domain (PF24833; HMM-score: 14.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8795
    • Cytoplasmic Membrane Score: 0.064
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0562
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001819
    • TAT(Tat/SPI): 0.000127
    • LIPO(Sec/SPII): 0.000268
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 15927487 NCBI
  • RefSeq: NP_375020 NCBI
  • UniProt: A0A0H3JMP6 UniProt

⊟Protein sequence[edit | edit source]

  • MYQLEDDSLMLHNDLYQINMAESYWNDNIHEKMAVFDLYFRKMPFNSGYAVFNGLKRVIDFIEHFGFSESDLEYLKSIGYKDDFLSYLKDLKFTGSIRSMQEGELCFGNEPLLRVEAPLIQAQLIETILLNIVNFHTLITTKASRIRQIASNDKLMEFGTRRAQEIDAALWGARAAYIGGFDSTSNVRAGKLFGIPVSGTHAHAFVQTYGDEYVAFKKYAERHKNCVFLVDTFHTLKSGVPNAIKVAKELGDKINFVGIRLDSGDIAYLSKEARRMLDEAGFTETKIIASNDLDEETITSLKAQGAKVDSWGVGTKLITGYDQPALGAVYKLVAIENEEGSYSDRIKLSNNAEKVTTPGKKNVYRIINKKTGKAEGDYITLENENPYDEQPLKLFHPVHTYKMKFIKSFEAIDLHHNIYENGKLVYQMPTEDESREYLAQGLQSIWDENKRFLNPQEYPVDLSKACWDNKHKRIFEVAEHVKEMEEDNE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • ⊟interaction partners:
    SA1305(hu)DNA-binding protein II  [1] (data from MRSA252)
    SA0496(rplA)50S ribosomal protein L1  [1] (data from MRSA252)
    SA2044(rplB)50S ribosomal protein L2  [1] (data from MRSA252)
    SA2047(rplC)50S ribosomal protein L3  [1] (data from MRSA252)
    SA2035(rplE)50S ribosomal protein L5  [1] (data from MRSA252)
    SA2033(rplF)50S ribosomal protein L6  [1] (data from MRSA252)
    SA2029(rplO)50S ribosomal protein L15  [1] (data from MRSA252)
    SA2040(rplP)50S ribosomal protein L16  [1] (data from MRSA252)
    SA1084(rplS)50S ribosomal protein L19  [1] (data from MRSA252)
    SA1473(rplU)50S ribosomal protein L21  [1] (data from MRSA252)
    SA2042(rplV)50S ribosomal protein L22  [1] (data from MRSA252)
    SAS052(rpsD)30S ribosomal protein S4  [1] (data from MRSA252)
    SA2024(rpsK)30S ribosomal protein S11  [1] (data from MRSA252)
    SA2038(rpsQ)30S ribosomal protein S17  [1] (data from MRSA252)

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: nadE < SA1729

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: data available for COL

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Jump up to: 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Artem Cherkasov, Michael Hsing, Roya Zoraghi, Leonard J Foster, Raymond H See, Nikolay Stoynov, Jihong Jiang, Sukhbir Kaur, Tian Lian, Linda Jackson, Huansheng Gong, Rick Swayze, Emily Amandoron, Farhad Hormozdiari, Phuong Dao, Cenk Sahinalp, Osvaldo Santos-Filho, Peter Axerio-Cilies, Kendall Byler, William R McMaster, Robert C Brunham, B Brett Finlay, Neil E Reiner
    Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
    J Proteome Res: 2011, 10(3);1139-50
    [PubMed:21166474] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA1729&oldid=59119"
  • This page was last edited on 10 March 2016, at 14:39.
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