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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

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⊟Summary[edit | edit source]

Contents

  • 1 Summary
  • 2 Genome View
  • 3 Gene
    • 3.1 General
    • 3.2 Accession numbers
    • 3.3 Phenotype
    • 3.4 DNA sequence
  • 4 Protein
    • 4.1 General
    • 4.2 Function
    • 4.3 Structure, modifications & cofactors
    • 4.4 Localization
    • 4.5 Accession numbers
    • 4.6 Protein sequence
    • 4.7 Experimental data
  • 5 Expression & Regulation
    • 5.1 Operon
    • 5.2 Regulation
    • 5.3 Transcription pattern
    • 5.4 Protein synthesis (provided by Aureolib)
    • 5.5 Protein stability
  • 6 Biological Material
    • 6.1 Mutants
    • 6.2 Expression vector
    • 6.3 lacZ fusion
    • 6.4 GFP fusion
    • 6.5 two-hybrid system
    • 6.6 FLAG-tag construct
    • 6.7 Antibody
  • 7 Other Information
  • 8 Literature
    • 8.1 References
    • 8.2 Relevant publications
  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1451 [new locus tag: NWMN_RS08185 ]
  • pan locus tag?: SAUPAN004126000
  • symbol: glk
  • pan gene symbol?: glk
  • synonym: glcK
  • product: glucokinase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1451 [new locus tag: NWMN_RS08185 ]
  • symbol: glk
  • product: glucokinase
  • replicon: chromosome
  • strand: -
  • coordinates: 1618090..1619076
  • length: 987
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID: 5330865 NCBI
  • RefSeq: YP_001332485 NCBI
  • BioCyc:
  • MicrobesOnline: 3707003 MicrobesOnline

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACAAAAATTATTTTAGCAGCTGATGTAGGCGGGACGACTTGTAAATTAGGTATTTTC
    ACACCTGAATTAGAACAATTACATAAATGGTCTATTCACACTGATACATCTGATAGTACA
    GGATATACACTTTTGAAAGGAATTTATGATTCGTTTGTTGAAAAAGTAAATGAAAATAAT
    TATAATTTTTCAAATGTACTTGGCGTAGGTATTGGTGTACCAGGTCCTGTTGACTTTGAA
    AAAGGTACAGTAAATGGAGCAGTAAACTTATATTGGCCAGAAAAAGTTAATGTACGTGAG
    ATTTTTGAACAATTCGTTGATTGTCCAGTGTATGTAGATAATGATGCTAACATAGCTGCT
    TTAGGGGAGAAACACAAAGGTGCTGGTGAAGGTGCCGATGATGTTGTTGCCATCACACTT
    GGTACAGGTCTAGGTGGAGGAATTATTTCAAATGGTGAAATCGTACATGGTCATAATGGC
    TCTGGCGCAGAAATAGGTCATTTTAGAGCAGACTTCGATCAACGATTTAAATGTAATTGT
    GGTCGTTCTGGATGTATTGAAACAGTTGCTTCAGCGACAGGCGTTGTTAACTTAGTTAAC
    TTCTACTATCCGAAGTTGACGTTTAGATCTTCTATATTAGAATTGATTAAAGAAAATAAG
    GTTACAGCAAAAGCTGTTTTTGATGCGGCAAAAGCTGGTGACCAATTCTGTATTTTCATT
    ACTGAAAAGGTTGCAAACTATATTGGATATTTATGTAGTATTATTAGTGTTACAAGTAAT
    CCGAAATATATCGTTCTAGGTGGAGGAATGTCTACTGCAGGACCTATTTTAATTGAAAAT
    ATTAAAACAGAATATCATAATTTAACATTTGCACCTGCTCAATTTGAAACTGAAATTGTA
    CAAGCGAAATTAGGTAATGATGCAGGTATTACAGGAGCAGCAGGATTAATCAAGACCTAT
    GTATTAGATAAAGAGGGGGTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1451 [new locus tag: NWMN_RS08185 ]
  • symbol: Glk
  • description: glucokinase
  • length: 328
  • theoretical pI: 5.04559
  • theoretical MW: 35077.6
  • GRAVY: 0.0429878

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General ROK family protein (putative glucokinase) (TIGR00744; HMM-score: 496.8)
  • TheSEED  :
    • Glucokinase (EC 2.7.1.2)
    Carbohydrates Central carbohydrate metabolism Glycolysis and Gluconeogenesis  Glucokinase (EC 2.7.1.2)
  • ⊞PFAM:
    Actin_ATPase (CL0108) ROK; ROK family (PF00480; HMM-score: 216.1)
    and 1 more
    Glucokinase; Glucokinase (PF02685; HMM-score: 22.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • ⊞DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9842
    • Cytoplasmic Membrane Score: 0.0048
    • Cell wall & surface Score: 0.0005
    • Extracellular Score: 0.0106
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009185
    • TAT(Tat/SPI): 0.000323
    • LIPO(Sec/SPII): 0.00625
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI: 151221663 NCBI
  • RefSeq: YP_001332485 NCBI
  • UniProt: A0A0H3K8S3 UniProt

⊟Protein sequence[edit | edit source]

  • MTKIILAADVGGTTCKLGIFTPELEQLHKWSIHTDTSDSTGYTLLKGIYDSFVEKVNENNYNFSNVLGVGIGVPGPVDFEKGTVNGAVNLYWPEKVNVREIFEQFVDCPVYVDNDANIAALGEKHKGAGEGADDVVAITLGTGLGGGIISNGEIVHGHNGSGAEIGHFRADFDQRFKCNCGRSGCIETVASATGVVNLVNFYYPKLTFRSSILELIKENKVTAKAVFDAAKAGDQFCIFITEKVANYIGYLCSIISVTSNPKYIVLGGGMSTAGPILIENIKTEYHNLTFAPAQFETEIVQAKLGNDAGITGAAGLIKTYVLDKEGVK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

  • MicrobesOnline: NWMN_1443 < NWMN_1444 < NWMN_1445 < NWMN_1446 < NWMN_1447 < NWMN_1448 < NWMN_1449 < NWMN_1450 < glk

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

  • S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

  • Aureolib: data available for COL

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=NWMN_1451&oldid=64673"
  • This page was last edited on 10 March 2016, at 17:38.
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