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Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1369
  • symbol: SA1369
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1577707..1578204
  • length: 498
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATC
    AAAAGACATGTATACAGTATTAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCG
    ATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACTTAATTAGACTTAGCAAAACT
    TTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
    CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATT
    TTACATAAAGGTGAAGAAATGATCGAATACAAATTAATAAATAATAAAATTATTAAAGTT
    GTAAATGACAGAGGAAATATAACAATGATTAATAATGTTACAGCATTTACTGCAAATATC
    TACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
    AAAACTATTTATGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    498

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1369
  • symbol: SA1369
  • description: hypothetical protein
  • length: 165
  • theoretical pI: 10.199
  • theoretical MW: 19181.9
  • GRAVY: 0.355758

Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Surface structures prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 24.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 24.5)
    and 3 more
    Cell structure Cell envelope Surface structures Verru_Chthon cassette protein C (TIGR02599; HMM-score: 16.6)
    Cell structure Cell envelope Surface structures type IV pilus modification protein PilV (TIGR02523; HMM-score: 12.5)
    Genetic information processing Protein fate Protein modification and repair type IV pilus modification protein PilV (TIGR02523; HMM-score: 12.5)
  • TheSEED  :
    • Late competence protein ComGF, access of DNA to ComEA, FIG017774
    DNA Metabolism DNA uptake, competence Late competence  Late competence protein ComGF, access of DNA to ComEA, FIG017774
  • PFAM:
    no clan defined ComGF; Putative Competence protein ComGF (PF15980; HMM-score: 36.7)
    and 2 more
    N_methyl; Prokaryotic N-terminal methylation motif (PF07963; HMM-score: 27.9)
    Sec62; Translocation protein Sec62 (PF03839; HMM-score: 10)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9627
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0371
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001627
    • TAT(Tat/SPI): 0.000085
    • LIPO(Sec/SPII): 0.000814
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDILEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQTKTIYV

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1369
  • pan locus tag?: SAUPAN004118000
  • symbol: SA1369
  • pan gene symbol?: comGF
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1369
  • symbol: SA1369
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1577707..1578204
  • length: 498
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATC
    AAAAGACATGTATACAGTATTAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCG
    ATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACTTAATTAGACTTAGCAAAACT
    TTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
    CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATT
    TTACATAAAGGTGAAGAAATGATCGAATACAAATTAATAAATAATAAAATTATTAAAGTT
    GTAAATGACAGAGGAAATATAACAATGATTAATAATGTTACAGCATTTACTGCAAATATC
    TACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
    AAAACTATTTATGTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    498

This data comes from external databases and cannot be edited.

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1369
  • symbol: SA1369
  • description: hypothetical protein
  • length: 165
  • theoretical pI: 10.199
  • theoretical MW: 19181.9
  • GRAVY: 0.355758

Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Surface structures prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 24.5)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 24.5)
    and 3 more
    Cell structure Cell envelope Surface structures Verru_Chthon cassette protein C (TIGR02599; HMM-score: 16.6)
    Cell structure Cell envelope Surface structures type IV pilus modification protein PilV (TIGR02523; HMM-score: 12.5)
    Genetic information processing Protein fate Protein modification and repair type IV pilus modification protein PilV (TIGR02523; HMM-score: 12.5)
  • TheSEED  :
    • Late competence protein ComGF, access of DNA to ComEA, FIG017774
    DNA Metabolism DNA uptake, competence Late competence  Late competence protein ComGF, access of DNA to ComEA, FIG017774
  • PFAM:
    no clan defined ComGF; Putative Competence protein ComGF (PF15980; HMM-score: 36.7)
    and 2 more
    N_methyl; Prokaryotic N-terminal methylation motif (PF07963; HMM-score: 27.9)
    Sec62; Translocation protein Sec62 (PF03839; HMM-score: 10)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9627
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0371
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001627
    • TAT(Tat/SPI): 0.000085
    • LIPO(Sec/SPII): 0.000814
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDILEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQTKTIYV

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

This data comes from external databases and cannot be edited.

Other Information[edit | edit source]

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]