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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS11250 [old locus tag: SA1960 ]
  • pan locus tag?: SAUPAN005495000
  • symbol: SA_RS11250
  • pan gene symbol?: mtlA
  • synonym:
  • product: PTS mannitol transporter subunit IICB

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS11250 [old locus tag: SA1960 ]
  • symbol: SA_RS11250
  • product: PTS mannitol transporter subunit IICB
  • replicon: chromosome
  • strand: +
  • coordinates: 2212569..2214107
  • length: 1539
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2212569..2214107) NCBI
  • BioCyc: SA_RS11250 BioCyc
  • MicrobesOnline: see SA1960

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGTCGCAAACTGAAGAGAAAAAAGGAATTGGTCGTCGCGTTCAAGCATTCGGATCATTT
    TTGAGTAGTATGATTATGCCAAACATTGGTGCATTCATCGCTTGGGGTTTCATCGCGGCC
    ATTTTTATAGATAATGGATGGTTACCTAACAAAGATTTAGCTACTTTAGCAGGACCAATG
    ATTACTTATTTAATCCCATTATTGATCGCATTTAGTGGTGGTCGTTTAATTTATGATTTA
    CGTGGTGGTATCATCGCAGCAACAGCAACTATGGGGGTCATCGTTGCATTACCTGATACA
    CCAATGTTACTTGGTGCAATGATTATGGGTCCACTTGTTGGTTGGTTAATGAAGAAGACC
    GACCAATTGATTCAACCTAGAACGCCACAAGGTTTTGAAATGTTATTTAATAACTTTTCT
    GCTGGTATTTTAGGATTTATCATGACGATTGCAGGATTTAAAATTTTAGCACCACTTATG
    AAATTTATTATGCATATTTTATCAGTGGCAGTTGAAGCATTAGTACATGCACACCTACTT
    CCACTTGTAAGTATTTTAGTAGAGCCTGCAAAAATTGTATTTTTAAACAATGCGATTAAC
    CATGGTGTATTCACACCGCTTGGTGCAGATCAAGCTGCAAAAGCTGGTCAATCAATTTTA
    TACACAATTGAATCTAACCCTGGACCAGGTTTAGGTATCTTACTTGCTTATATGATTTTT
    GGAAAAGGCACTGCAAAAGCAACGTCATATGGTGCTGGAATTATCCACTTCTTAGGTGGT
    ATTCATGAAATTTATTTCCCATATGTATTAATGCGTCCTTTATTATTTATCGCTGTTATT
    TTAGGTGGAATGACTGGTGTTGCAACTTATCAAGCAACAGGATTTGGATTTAAAAGTCCC
    GCGTCACCAGGTTCATTTATAGTTTACTGTTTAAATGCACCTAGAGGTGAATTCTTGCAC
    ATGTTGCTCGGTGTCTTCCTTGCTGCACTTGTATCATTCGTTGTAGCTGCTTTAATTATG
    AAGTTCACTAGAGAACCAAAGCAGGATTTAGAAGCTGCGACAGCTCAAATGGAAAATACT
    AAAGGGAAAAAATCAAGCGTTGCTTCTAAGTTAGTATCTTCTGATAAAAATGTTAATACA
    GAAGAAAATGCTAGTGGTAATGTTAGTGAAACATCTTCATCAGATGATGATCCTGAAGCG
    CTATTGGATAATTACAACACTGAAGATGTTGATGCACACAATTACAATAATATAAATCAT
    GTTATTTTTGCCTGCGATGCGGGTATGGGTTCTAGTGCAATGGGTGCAAGCATGTTACGT
    AATAAATTTAAAAAGGCGGGCATTAATGATATTACAGTTACAAATACTGCGATTAATCAA
    TTGCCAAAAGATGCTCAATTAGTTATCACTCAGAAAAAACTAACTGATCGTGCTATTAAA
    CAAACACCAAATGCCATCCATATTTCAGTGGATAATTTCCTTAATTCACCAAGATATGAA
    GAACTTTTAAATAATCTAAAAAAAGATGATCAAGCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1539


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS11250 [old locus tag: SA1960 ]
  • symbol: SA_RS11250
  • description: PTS mannitol transporter subunit IICB
  • length: 512
  • theoretical pI: 7.76606
  • theoretical MW: 55064.9
  • GRAVY: 0.299219

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.1.197?  ExPASy
    Protein-N(pi)-phosphohistidine--D-mannitol phosphotransferase [Protein]-N(pi)-phospho-L-histidine + D-mannitol(Side 1) = [protein]-L-histidine + D-mannitol 1-phosphate(Side 2)
  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, mannitol-specific IIC component (TIGR00851; EC 2.7.1.69; HMM-score: 589)
    Signal transduction Signal transduction PTS PTS system, mannitol-specific IIC component (TIGR00851; EC 2.7.1.69; HMM-score: 589)
    and 2 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 14.9)
    Signal transduction Signal transduction PTS PTS system, lactose/cellobiose family IIB component (TIGR00853; HMM-score: 14.9)
  • TheSEED: see SA1960
  • PFAM:
    PTS_EIIC (CL0493) PTS_EIIC; Phosphotransferase system, EIIC (PF02378; HMM-score: 68)
    and 4 more
    Phosphatase (CL0031) PTS_IIB; PTS system, Lactose/Cellobiose specific IIB subunit (PF02302; HMM-score: 48.5)
    no clan defined MSP1a; Major surface protein 1a (MSP1a) (PF11670; HMM-score: 16.2)
    PIGBOS1; PIGBOS1-like (PF23670; HMM-score: 12.6)
    MscL; Large-conductance mechanosensitive channel, MscL (PF01741; HMM-score: 9.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9994
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0005
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009005
    • TAT(Tat/SPI): 0.001102
    • LIPO(Sec/SPII): 0.003247
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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