From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02260 [old locus tag: SA0394 ]
  • pan locus tag?: SAUPAN002130000
  • symbol: SA_RS02260
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02260 [old locus tag: SA0394 ]
  • symbol: SA_RS02260
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 454848..456335
  • length: 1488
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (454848..456335) NCBI
  • BioCyc: SA_RS02260 BioCyc
  • MicrobesOnline: see SA0394

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGAGAGAAAATTTTAAATTACGTAAAATGAAAGTCGGTTTAGTATCAGTTGCAATTACT
    ATGTTATATATCATGACAAACGGACAAGCTGAAGCATCTGAAACTAATCAGAAGGTAAGT
    ACAAATCAAGAATCAAAAGCTGTTTCGCAGACTGAACAAAATTCCAAAGAAACAAAAGCG
    GCAGAGTCTTCTAAAAACTTTGTAAATTTAGATCCTATCAAACCAGGAGCTCAAAAAGTA
    ACAGGTACTACATTACCGAATCATATTATTTTACTTAATATAGATGGTAAAAGTGCTGAT
    TCAGTTGAAGGAGGATATGGTGATTTTATAACTGCAAATGACAAAGGAGAGTTTGAGTAT
    CCTTTAAATAATCGTAAAATTGTCCATAACCAAGAAATTGAGGTATCATCATCAAGCCCT
    GATTTAGGTGACGATGAAGAGGATGAAGAAGTAGAAGAATCTTCAACTGAAAAAGCTGGT
    GCTGAGGAAGAAAGTACAGATGCTAAAGCTACATATACAACACCACGATATGAAAAAGCG
    TATGAAATACCGAAAGAACAACTAAAAGAAAAAGATGGACACCACCAAGTTTTCATCGAA
    CCAATTACTGAAGGTTCAGGTATTATTAAAGGTCATACGTCTGTAAAAGGTAAAGTTGCT
    CTATCTATTAATAATAAATTTATTAATTTTGAAGAAAGAGCTAAAGGTGGAATTAGTAAA
    GAAGATACTAAAGCTAGTTCCGATGGTGTTTGGATGCCTATTAATGAAAAAGGATATTTT
    GATTTTGATTTCAAAAAAAATCCTTTTGATAACTTAGAGTTAAAGAAAAATGATGAAATC
    TCATTAACATTTGCACCTGATGATGAAGATGAAGCATTGAAGTCATTAATTTTCAAAACT
    AAAGTAACGAGCTTAGAAGATATCGATAAAGCAGAAACAAAATATGACCATACTAAAGTG
    GAAAAAGTAAAAGTATTGAAAGATGTTAAAGAAGATATACATGTAGATGAAATTTACGGA
    AGCTTATATCATACAGAAAAAGGTAAAGGTATTCTTGATAAACAAGGAACTAAAGAGATT
    ACAGGGAAGACTAAATTCGCGAATGCAGTAGTGAAAGTATATTCTGACTTAGGTGATGCG
    CAATTGTTCCCTGATATTCAAGTAGATGAAAATGGTAAATTTAGCTTTGATGCTGAAAAA
    GCTGGTTTCAGATTGCAAAATGGAGAAACATTGAATTTTGCAGTAGTTAAACCTATTACT
    GGTGACCTATTACATCAAGGATTTGTCTCTAAATATATTGATGTATATGAATCTCCGGAA
    GAAAAGAAAGAACGTGAATTTGAAGAAAAACTTGAAAACACGCCTGCATATCATAAATTA
    CATGGTGATAAAATTGTAGGATATGATGTTCAAGGTAATCCATCAACTTGGTTCTATCCA
    TTAGGTGAAAAGAAAGTTGAACGTACAACACCTAAATTAGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1488

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS02260 [old locus tag: SA0394 ]
  • symbol: SA_RS02260
  • description: hypothetical protein
  • length: 495
  • theoretical pI: 4.81306
  • theoretical MW: 55498.4
  • GRAVY: -0.795152

⊟Function[edit | edit source]

  • TIGRFAM:
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 18.1)
  • TheSEED: see SA0394
  • PFAM:
    no clan defined YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 15.5)
    FimbA (CL0450) Mfa_like_2; Fimbrillin-like (PF15415; HMM-score: 15.4)
    and 1 more
    no clan defined FAM176; FAM176 family (PF14851; HMM-score: 5.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 32 aa
    • SP(Sec/SPI): 0.990948
    • TAT(Tat/SPI): 0.003166
    • LIPO(Sec/SPII): 0.002546
    • Cleavage Site: CS pos: 32-33. AEA-SE. Pr: 0.9448
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRENFKLRKMKVGLVSVAITMLYIMTNGQAEASETNQKVSTNQESKAVSQTEQNSKETKAAESSKNFVNLDPIKPGAQKVTGTTLPNHIILLNIDGKSADSVEGGYGDFITANDKGEFEYPLNNRKIVHNQEIEVSSSSPDLGDDEEDEEVEESSTEKAGAEEESTDAKATYTTPRYEKAYEIPKEQLKEKDGHHQVFIEPITEGSGIIKGHTSVKGKVALSINNKFINFEERAKGGISKEDTKASSDGVWMPINEKGYFDFDFKKNPFDNLELKKNDEISLTFAPDDEDEALKSLIFKTKVTSLEDIDKAETKYDHTKVEKVKVLKDVKEDIHVDEIYGSLYHTEKGKGILDKQGTKEITGKTKFANAVVKVYSDLGDAQLFPDIQVDENGKFSFDAEKAGFRLQNGETLNFAVVKPITGDLLHQGFVSKYIDVYESPEEKKEREFEEKLENTPAYHKLHGDKIVGYDVQGNPSTWFYPLGEKKVERTTPKLEK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS02260&oldid=101905"