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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus USA300_FPR3757
locus tag: SAUSA300_RS04415 [old locus tag: SAUSA300_0819 ]
pan locus tag^?: SAUPAN002895000
symbol: SAUSA300_RS04415
pan gene symbol^?: sufD
synonym:
product: Fe-S cluster assembly protein SufD

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SAUSA300_RS04415 [old locus tag: SAUSA300_0819 ]
symbol: SAUSA300_RS04415
product: Fe-S cluster assembly protein SufD
replicon: chromosome
strand: +
coordinates: 898628..899935
length: 1308
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_007793 (898628..899935) NCBI
BioCyc: SAUSA300_RS04415 BioCyc
MicrobesOnline: see SAUSA300_0819

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

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ATGACAACTGATATTTTGAACATTTCTGAAGAACAACTTGTTGATTATTCTAAAGCCCAC
AATGAACCTTCTTGGATGACAGAATTACGTAAAAAAGCTTTGAAATTAACAGAAACTTTA
GAAATGCCAAAACCTGATAAAACAAAATTAAGAAAATGGGATTTTGATTCTTTTAAACAA
CACGATGTAAAAGGTGATGTTTATCAATCTTTATCACAATTACCTGAGTCAGTAAGAGAA
ATTATTGACGTAGATCATTCTAAAAACTTAGTAATTCAACATAATAATACGATTGCGTAC
ACACAAGTTGATGATAATGCATCGAAAGATGGCGTTATCGTTGAAGGTTTAGCAGACGCT
CTTATGAACCATAGTGATTTAGTACAAAAGTACTTTATGAAAGATGCAGTAACAGTAGAT
GAACATCGTATCACAGCGCTACACACGGCATTAGTTAATGGTGGCGTATTTGTTTATGTT
CCTAAAAATGTAGTTGTAGAACATCCAGTACAATACGTTGTGTTGCACGACGACGAAAAT
GCAAGCTTTTATAACCATGTTATCATCGTTACTGAAGAAAGCGCCGAAGTCACATATGTT
GAAAATTACTTATCAAATGCATCTGGTGAAGGAAATCAATTAAATATTATTTCTGAAGTG
ATTGCTGGTGCAAATTCAAATATCACATATGGCTCAGTGGACTATATGGATAAAGGCTTT
ACAGGTCATATCATTCGACGTGGTATTACTGAAGCGGATGCCTCAATTAATTGGGCACTA
GGTTTAATGAATGAGGGTAGCCAAATTATTGATAATACAACAAATTTATTTGGTGATCGT
TCAACAAGTTCACTTAAATCAGTAGTTGTAGGTACAGGCGAACAAAAAATTAATCTAACA
TCTAAAATCGTACAATATGGTAAAGAAACAGATGGTTATATCCTTAAACATGGTGTTATG
AAAGAACATGCATCGTCTGTATTTAATGGTATCGGCTACATTAAGCATGGTGGAACTAAA
TCAATTGCTAATCAGGAATCACGTGTATTAATGTTATCTGAACATGCTCGTGGTGACGCG
AATCCTATTTTATTAATTGATGAAGATGATGTACAAGCTGGTCATGCTGCATCAGTAGGT
CGTGTTGATCCAGATCAACTTTACTATTTAATGAGTCGTGGTATTTCTCAAAGAGAAGCG
GAACGTCTTGTTATACATGGTTTCTTAGATCCAGTAGTACGTGAATTACCTATCGAAGAC
GTTAAACGTCAATTGAGAGAAGTAATTGAACGCAAAGTTTCTAAATAA
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⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SAUSA300_RS04415 [old locus tag: SAUSA300_0819 ]
symbol: SAUSA300_RS04415
description: Fe-S cluster assembly protein SufD
length: 435
theoretical pI: 5.20929
theoretical MW: 48548.3
GRAVY: -0.353103

⊟Function[edit | edit source]

TIGRFAM:
Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly protein SufD (TIGR01981; HMM-score: 239.2)
Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly protein SufB (TIGR01980; HMM-score: 232.9)
TheSEED: see SAUSA300_0819
PFAM:
no clan defined SUFBD_core; SUF system FeS cluster assembly, SufBD core domain (PF01458; HMM-score: 218.2)
and 2 more
SufBD_N; SufBD protein N-terminal region (PF19295; HMM-score: 63.6)
HTH (CL0123) HTH_ABP1_N; Fission yeast centromere protein N-terminal domain (PF18107; HMM-score: 14.3)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.828
- Cytoplasmic Membrane Score: 0.093
- Cell wall & surface Score: 0.0079
- Extracellular Score: 0.0711
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003227
- TAT(Tat/SPI): 0.000212
- LIPO(Sec/SPII): 0.000472
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446127717 NCBI
RefSeq: WP_000205572 NCBI
UniProt: see SAUSA300_0819

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell: data available for COL
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator: PerR* see SAUSA300_0819

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: data available for COL

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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