PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002895000
• symbol^?: sufD
• synonym:
• description^?: Fe-S cluster assembly protein SufD

  descriptions from strain specific annotations:

  • Fe-S cluster assembly protein SufD
  • FeS assembly protein SufD
  • ABC superfamily ATP binding cassette transporter, membrane protein
  • ABC transporter
  • ABC transporter ATP-binding protein
  • Iron-sulfur cluster assembly protein SufD
  • Sufd
• strand^?: +
• coordinates^?: 3340308..3341612
• synteny block^?: BlockID0020610
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0915 (sufD)
N315:
SA0775
NCTC8325:
SAOUHSC_00848
Newman:
NWMN_0786 (sufD)
USA300_FPR3757:
SAUSA300_0819 (sufD)
04-02981:
SA2981_0798 (sufD)
08BA02176:
C248_0912
11819-97:
MS7_0870 (sufD)
6850:
RSAU_000793 (sufD)
71193:
ST398NM01_0898
ECT-R 2:
ECTR2_770 (sufD)
ED133:
SAOV_0860
ED98:
SAAV_0814 (sufD)
HO 5096 0412:
SAEMRSA15_07450
JH1:
SaurJH1_0860
JH9:
SaurJH9_0844
JKD6008:
SAA6008_00865 (sufD)
JKD6159:
SAA6159_00774 (sufD)
LGA251:
SARLGA251_07720
M013:
M013TW_0835
MRSA252:
SAR0877
MSHR1132:
SAMSHR1132_07670
MSSA476:
SAS0785
Mu3:
SAHV_0839
Mu50:
SAV0843
MW2:
MW0796
RF122:
SAB0775
ST398:
SAPIG0898 (sufD)
T0131:
SAT0131_00942 (leuD)
TCH60:
HMPREF0772_12333 (sufD)
TW20:
SATW20_09150
USA300_TCH1516:
USA300HOU_0871
VC40:
SAVC_03750

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
  N315            MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
  NCTC8325        MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
  Newman          MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
  USA300_FPR3757  MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQ
                  ************************************************************
  
  COL             HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
  N315            HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
  NCTC8325        HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
  Newman          HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
  USA300_FPR3757  HDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADA
                  ************************************************************
  
  COL             LMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDEN
  N315            LMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKN
  NCTC8325        LMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDEN
  Newman          LMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDEN
  USA300_FPR3757  LMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDEN
                  **********:***********************************************:*
  
  COL             ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
  N315            ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
  NCTC8325        ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
  Newman          ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
  USA300_FPR3757  ASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGF
                  ************************************************************
  
  COL             TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
  N315            TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
  NCTC8325        TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
  Newman          TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
  USA300_FPR3757  TGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLT
                  ************************************************************
  
  COL             SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
  N315            SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
  NCTC8325        SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
  Newman          SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
  USA300_FPR3757  SKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA
                  ************************************************************
  
  COL             NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
  N315            NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
  NCTC8325        NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
  Newman          NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
  USA300_FPR3757  NPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIED
                  ************************************************************
  
  COL             VKRQLREVIERKVSK
  N315            VKRQLREVIERKVSK
  NCTC8325        VKRQLREVIERKVSK
  Newman          VKRQLREVIERKVSK
  USA300_FPR3757  VKRQLREVIERKVSK
                  ***************