From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1321 [new locus tag: SAUSA300_RS07195 ]
  • pan locus tag?: SAUPAN003860000
  • symbol: SAUSA300_1321
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1321 [new locus tag: SAUSA300_RS07195 ]
  • symbol: SAUSA300_1321
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1452789..1453226
  • length: 438
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAATGCATATGATGCTTATATGAAAGAAATTGCGCAACAAATGCGTGGCGAATTAACT
    CAAAATGGTTTTACAAGTTTAGAAACGAGCGAAGCAGTATCGGAGTATATGAACCAAGTA
    AATGCTGATGACACTACTTTTGTAGTTATTAACTCTACATGCGGCTGTGCAGCTGGATTA
    GCAAGACCAGCTGCAGTAGCAGTTGCAACACAAAATGAACATAGACCTACAAATACAGTT
    ACAGTTTTTGCTGGGCAAGATAAAGAAGCAACTGCTACAATGCGAGAATTCATTCAGCAA
    GCACCATCTAGTCCTTCGTATGCTTTATTCAAAGGTCAAGATTTAGTTTATTTTATGCCT
    AGAGAATTTATCGAAGGTAGAGATATTAATGACATTGCAATGGACTTAAAGGATGCCTTT
    GACGAAAATTGTAAATAG
    60
    120
    180
    240
    300
    360
    420
    438

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1321 [new locus tag: SAUSA300_RS07195 ]
  • symbol: SAUSA300_1321
  • description: hypothetical protein
  • length: 145
  • theoretical pI: 4.14983
  • theoretical MW: 16013.8
  • GRAVY: -0.362069

⊟Function[edit | edit source]

  • TIGRFAM:
    putative bacilliredoxin, YphP/YqiW family (TIGR04191; EC 1.-.-.-; HMM-score: 181.9)
  • TheSEED  :
    • UPF0403 protein YphP
  • PFAM:
    no clan defined Disulph_isomer; Disulphide isomerase (PF06491; HMM-score: 179.6)
    and 2 more
    LytR_C; LytR cell envelope-related transcriptional attenuator (PF13399; HMM-score: 16.8)
    THBO-biosyn (CL0334) GCHY-1; Type I GTP cyclohydrolase folE2 (PF02649; HMM-score: 13.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.67
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.061182
    • TAT(Tat/SPI): 0.00298
    • LIPO(Sec/SPII): 0.002073
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNAYDAYMKEIAQQMRGELTQNGFTSLETSEAVSEYMNQVNADDTTFVVINSTCGCAAGLARPAAVAVATQNEHRPTNTVTVFAGQDKEATATMREFIQQAPSSPSYALFKGQDLVYFMPREFIEGRDINDIAMDLKDAFDENCK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_1321&oldid=89151"