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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1014 [new locus tag: SAUSA300_RS05455 ]
  • pan locus tag?: SAUPAN003341000
  • symbol: pyc
  • pan gene symbol?: pycA
  • synonym:
  • product: pyruvate carboxylase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1014 [new locus tag: SAUSA300_RS05455 ]
  • symbol: pyc
  • product: pyruvate carboxylase
  • replicon: chromosome
  • strand: +
  • coordinates: 1108935..1112387
  • length: 3453
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    TTGAAACAAATAAAAAAGTTACTTGTTGCTAACCGTGGAGAAATTGCAATTCGTATATTC
    AGAGCGGCGGCAGAATTAGACATCAGCACAGTTGCAATTTATTCGAATGAAGACAAAAGT
    TCATTACATAGATATAAAGCAGATGAATCCTATTTAGTTGGAAGTGATTTAGGTCCTGCT
    GAAAGTTATTTAAATATTGAGCGTATCATTGATGTAGCAAAACAAGCGAATGTGGATGCG
    ATTCATCCTGGCTATGGATTTTTAAGTGAAAATGAACAATTTGCGCGTCGTTGTGCAGAA
    GAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGATATGTTTGGAGATAAAGTT
    AAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATTCCTGGTACAGACGGTCCA
    ATTAAATCATATGAATTAGCAAAAGAATTTGCAGAAGAAGCTGGTTTCCCGCTAATGATT
    AAAGCCACAAGTGGTGGCGGCGGTAAAGGTATGAGAATCGTTCGTGAAGAAAGTGAATTA
    GAAGATGCTTTCCATAGAGCAAAATCAGAAGCTGAAAAATCATTTGGTAATAGTGAAGTT
    TACATAGAAAGATACATTGATAATCCAAAGCATATTGAAGTACAAGTCATAGGTGACGAA
    CATGGAAATATCGTACACTTATTTGAACGTGATTGTTCAGTACAACGTCGTCATCAAAAA
    GTTGTAGAAGTTGCACCATCAGTTGGATTATCATCAACATTACGTCAACGTATTTGTGAT
    GCTGCAATTCAATTGATGGAAAATATTAAATATGTCAATGCAGGTACTGTTGAATTTCTA
    GTATCTGGTGACGAATTCTTCTTTATAGAAGTTAACCCTCGTGTACAAGTAGAGCATACA
    ATTACAGAGATGGTAACAGGAATTGATATTGTTAAGACACAAATTTTAGTTGCAGCAGGT
    GCCGATTTATTTGGTGAAGAGATTAATATGCCGCAACAAAAAGATATTACAACATTAGGC
    TATGCCATCCAATGTCGTATTACAACAGAAGATCCGTTAAATGATTTCATGCCGGATACT
    GGAACAATCATTGCTTATCGTTCAAGCGGGGGCTTTGGTGTACGTCTTGATGCTGGAGAT
    GGTTTCCAAGGTGCTGAGATATCACCTTATTATGATTCATTACTCGTAAAATTATCTACA
    CACGCGATATCATTTAAACAAGCAGAAGAAAAAATGGTACGCTCATTACGAGAAATGCGT
    ATTCGTGGTGTTAAAACTAATATTCCATTCTTAATTAATGTAATGAAGAATAAAAAGTTC
    ACAAGTGGTGATTACACAACTAAATTTATTGAAGAAACACCAGAACTTTTCAACATTCAG
    CCGTCTCTAGATAGAGGTACTAAAACATTAGAATATATAGGTAATGTAACAATTAATGGT
    TTCCCAAATGTTGAGAAACGTCCGAAACCAGACTATGAATTAGCATCAATTCCAACTGTA
    TCTTCAAGTAAAATCGCTTCATTTAGTGGTACGAAACAATTGCTTGATGAAGTAGGTCCA
    AAAGGTGTAGCTGAATGGGTTAAAAAGCAGGATGATGTCTTACTAACAGATACAACCTTT
    AGAGATGCACACCAATCATTATTAGCTACACGAGTTAGAACTAAGGATATGATTAATATC
    GCATCCAAAACAGCGGACGTATTTAAAGATGGTTTCTCACTAGAAATGTGGGGCGGTGCT
    ACATTTGATGTGGCATATAATTTCTTGAAGGAAAACCCATGGGAACGACTTGAACGTCTA
    CGTAAAGCTATTCCAAATGTATTATTCCAAATGTTGTTACGTGCTTCAAACGCAGTTGGT
    TATAAAAACTATCCTGATAATGTTATTCATAAATTCGTACAAGAAAGTGCTAAAGCAGGC
    ATAGATGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAAT
    GAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATT
    TTAAATCCTGAGCGATCAAACATTTATACTTTAGAGTATTATGTCAAACTAGCTAAAGAG
    TTAGAACGTGAAGGTTTCCATATTTTAGCGATTAAAGATATGGCAGGCTTATTAAAACCT
    AAAGCCGCTTACGAATTGATTGGTGAGTTAAAATCAGCTGTAGATTTACCAATTCATCTT
    CACACTCATGATACAAGTGGTAATGGTTTATTAACATACAAACAAGCAATAGATGCTGGT
    GTCGATATCATTGATACTGCTGTTGCTTCAATGAGTGGTTTAACAAGTCAGCCAAGCGCC
    AATTCGTTATATTATGCATTAAATGGCTTCCCACGCCACCTTAGAACTGATATTGAAGGT
    ATGGAGTCACTTAGTCATTATTGGTCAACTGTACGTACTTATTATTCAGACTTTGAAAGT
    GATATCAAATCACCGAATACTGAAATTTATCAACATGAAATGCCTGGTGGACAGTATTCG
    AATTTAAGTCAACAAGCTAAAAGTTTAGGTTTAGGCGAAAGATTTGATGAAGTCAAAGAT
    ATGTATCGCAGAGTGAATTTCTTATTTGGTGATATCGTAAAAGTAACACCATCGTCTAAA
    GTAGTTGGTGATATGGCACTTTATATGGTACAAAATGATCTTGATGAACAATCCGTGATT
    ACAGATGGCTATAAATTAGATTTCCCAGAATCAGTAGTGTCGTTCTTCAAAGGTGAAATA
    GGACAACCTGTAAATGGTTTTAATAAAGATTTACAAGCGGTTATTTTAAAAGGCCAAGAA
    GCACTAACAGCTCGTCCAGGTGAATATCTAGAGCCAGTTGATTTTGAAAAAGTCCGTGAG
    TTGCTTGAAGAAGAGCAACAAGGTCCTGTTACGGAGCAAGATATTATTAGTTATGTACTA
    TATCCAAAAGTATATGAACAATATATTCAAACTAGAAATCAATACGGAAACTTATCGTTA
    CTTGATACGCCTACATTCTTCTTTGGAATGCGTAATGGTGAAACAGTAGAAATCGAAATC
    GATAAAGGTAAACGATTAATTATTAAACTAGAAACGATTAGTGAACCAGATGAAAATGGT
    AATAGAACGATTTACTATGCGATGAATGGTCAAGCGAGACGTATTTACATTAAAGATGAA
    AATGTGCATACAAATGCGAACGTTAAGCCAAAAGCAGATAAGAGTAATCCAAGTCATATC
    GGTGCTCAAATGCCAGGTTCAGTAACTGAAGTCAAGGTTAGTGTAGGTGAAACTGTGAAA
    GCTAATCAGCCGTTGCTAATTACTGAAGCTATGAAAATGGAAACAACAATTCAAGCACCA
    TTTGACGGTGTGATTAAACAAGTAACTGTAAATAATGGTGACACAATAGCGACAGGCGAT
    TTATTAATCGAAATTGAAAAAGCAACTGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3453

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1014 [new locus tag: SAUSA300_RS05455 ]
  • symbol: Pyc
  • description: pyruvate carboxylase
  • length: 1150
  • theoretical pI: 4.95345
  • theoretical MW: 128546
  • GRAVY: -0.325913

⊟Function[edit | edit source]

  • reaction:
    EC 6.4.1.1?  ExPASy
    Pyruvate carboxylase ATP + pyruvate + HCO3(-) = ADP + phosphate + oxaloacetate
  • TIGRFAM:
    Metabolism Energy metabolism Glycolysis/gluconeogenesis pyruvate carboxylase (TIGR01235; EC 6.4.1.1; HMM-score: 1798.3)
    and 28 more
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxylase subunit (TIGR00514; EC 6.3.4.14; HMM-score: 547.8)
    Metabolism Central intermediary metabolism Nitrogen metabolism urea carboxylase (TIGR02712; EC 6.3.4.6; HMM-score: 532.4)
    Metabolism Transport and binding proteins Cations and iron carrying compounds oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)
    Metabolism Energy metabolism Other oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Pyrimidine ribonucleotide biosynthesis carbamoyl-phosphate synthase, large subunit (TIGR01369; EC 6.3.5.5; HMM-score: 68.6)
    Metabolism Energy metabolism Pyruvate dehydrogenase dihydrolipoyllysine-residue acetyltransferase (TIGR01348; EC 2.3.1.12; HMM-score: 43.4)
    alpha-L-glutamate ligase, RimK family (TIGR00768; EC 6.3.2.-; HMM-score: 42.8)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan D-alanine--D-alanine ligase (TIGR01205; EC 6.3.2.4; HMM-score: 41.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylglycinamide formyltransferase 2 (TIGR01142; EC 2.1.2.-; HMM-score: 39.3)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylaminoimidazole carboxylase, ATPase subunit (TIGR01161; EC 4.1.1.21; HMM-score: 39.2)
    Metabolism Transport and binding proteins Unknown substrate efflux transporter, RND family, MFP subunit (TIGR01730; HMM-score: 34.3)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxyl carrier protein (TIGR00531; HMM-score: 34)
    homocitrate synthase (TIGR02146; EC 2.3.3.14; HMM-score: 32.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)
    Metabolism Central intermediary metabolism Nitrogen fixation homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)
    lysine biosynthesis enzyme LysX (TIGR02144; HMM-score: 28.9)
    isopropylmalate/citramalate/homocitrate synthases (TIGR02090; HMM-score: 26.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylamine--glycine ligase (TIGR00877; EC 6.3.4.13; HMM-score: 25.6)
    Metabolism Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 23.7)
    Metabolism Energy metabolism Other 4-hydroxy-2-oxovalerate aldolase (TIGR03217; EC 4.1.3.39; HMM-score: 23.7)
    Cellular processes Cellular processes Biosynthesis of natural products cyanophycin synthetase (TIGR02068; EC 6.3.2.29,6.3.2.30; HMM-score: 23.2)
    2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (TIGR02927; EC 2.3.1.61; HMM-score: 22.1)
    Metabolism Transport and binding proteins Other efflux pump membrane protein (TIGR00998; HMM-score: 18.9)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)
    Metabolism Amino acid biosynthesis Other pyrrolysine biosynthesis protein PylC (TIGR03909; HMM-score: 15.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 13.9)
    Metabolism Transport and binding proteins Other membrane fusion protein cluster 2 protein (TIGR00999; HMM-score: 12.7)
  • TheSEED  :
    • Pyruvate carboxylase (EC 6.4.1.1)
    Carbohydrates Central carbohydrate metabolism Pyruvate metabolism I: anaplerotic reactions, PEP  Pyruvate carboxylase (EC 6.4.1.1)
  • PFAM:
    Post-HMGL (CL0597) PYC_OADA; Conserved carboxylase domain (PF02436; HMM-score: 265.9)
    ATP-grasp (CL0179) CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786; HMM-score: 257.8)
    and 18 more
    NADP_Rossmann (CL0063) Biotin_carb_N; Biotin carboxylase, N-terminal domain (PF00289; HMM-score: 148.6)
    Hybrid (CL0105) Biotin_carb_C; Biotin carboxylase C-terminal domain (PF02785; HMM-score: 112)
    Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 69.4)
    ATP-grasp (CL0179) ATP-grasp; ATP-grasp domain (PF02222; HMM-score: 50.3)
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 39.6)
    TIM_barrel (CL0036) HMGL-like; HMGL-like (PF00682; HMM-score: 39.5)
    ATP-grasp (CL0179) Dala_Dala_lig_C; D-ala D-ala ligase C-terminus (PF07478; HMM-score: 38.9)
    ATP-grasp_3; ATP-grasp domain (PF02655; HMM-score: 30.3)
    Hybrid (CL0105) HlyD_3; HlyD family secretion protein (PF13437; HMM-score: 27.3)
    HlyD_D23; Barrel-sandwich domain of CusB or HlyD membrane-fusion (PF16576; HMM-score: 26.8)
    ATP-grasp (CL0179) RimK; RimK-like ATP-grasp domain (PF08443; HMM-score: 23.9)
    ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 15.6)
    GARS_A; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (PF01071; HMM-score: 15.3)
    Hybrid (CL0105) NQRA_N; NqrA N-terminal barrel-sandwich hybrid domain (PF05896; HMM-score: 13.4)
    GCV_H; Glycine cleavage H-protein (PF01597; HMM-score: 12.9)
    no clan defined PASTA; PASTA domain (PF03793; HMM-score: 12.5)
    TIM_barrel (CL0036) Radical_SAM; Radical SAM superfamily (PF04055; HMM-score: 12.3)
    POTRA (CL0191) YqfD; Putative stage IV sporulation protein YqfD (PF06898; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: biotin
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.839
    • Cytoplasmic Membrane Score: 0.082
    • Cell wall & surface Score: 0.0021
    • Extracellular Score: 0.0768
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008855
    • TAT(Tat/SPI): 0.000494
    • LIPO(Sec/SPII): 0.001059
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFNIQPSLDRGTKTLEYIGNVTINGFPNVEKRPKPDYELASIPTVSSSKIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKATD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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