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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0979 [new locus tag: NWMN_RS05485 ]
  • pan locus tag?: SAUPAN003341000
  • symbol: pycA
  • pan gene symbol?: pycA
  • synonym:
  • product: pyruvate carboxylase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0979 [new locus tag: NWMN_RS05485 ]
  • symbol: pycA
  • product: pyruvate carboxylase
  • replicon: chromosome
  • strand: +
  • coordinates: 1085501..1088971
  • length: 3471
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    TTGAGGAGTGTATCGCTATTGAAACAAATAAAAAAGTTACTTGTTGCTAACCGTGGAGAA
    ATTGCAATTCGTATATTCAGAGCGGCGGCAGAATTAGACATCAGCACAGTTGCAATTTAT
    TCGAATGAAGACAAAAGTTCATTACATAGATATAAAGCAGATGAATCCTATTTAGTTGGA
    AGTGATTTAGGTCCTGCTGAAAGTTATTTAAATATTGAGCGTATCATTGATGTAGCAAAA
    CAAGCGAATGTGGATGCGATTCATCCTGGCTATGGATTTTTAAGTGAAAATGAACAATTT
    GCGCGTCGTTGTGCAGAAGAAGGAATTAAATTTATTGGTCCTCATTTAGAACATTTAGAT
    ATGTTTGGAGATAAAGTTAAAGCTCGTACAACGGCTATCAAGGCAGATTTACCAGTTATT
    CCTGGTACAGACGGTCCAATTAAATCATATGAATTAGCAAAAGAATTTGCAGAAGAAGCT
    GGTTTCCCGCTAATGATTAAAGCCACAAGTGGTGGCGGCGGTAAAGGTATGAGAATCGTT
    CGTGAAGAAAGTGAATTAGAAGATGCTTTCCATAGAGCAAAATCAGAAGCTGAAAAATCA
    TTTGGTAATAGTGAAGTTTACATAGAAAGATACATTGATAATCCAAAGCATATTGAAGTA
    CAAGTCATAGGTGACGAACATGGAAATATCGTACACTTATTTGAACGTGATTGTTCAGTA
    CAACGTCGTCATCAAAAAGTTGTAGAAGTTGCACCATCAGTTGGATTATCATCAACATTA
    CGTCAACGTATTTGTGATGCTGCAATTCAATTGATGGAAAATATTAAATATGTCAATGCA
    GGTACTGTTGAATTTCTAGTATCTGGTGACGAATTCTTCTTTATAGAAGTTAACCCTCGT
    GTACAAGTAGAGCATACAATTACAGAGATGGTAACAGGAATTGATATTGTTAAGACACAA
    ATTTTAGTTGCAGCAGGTGCCGATTTATTTGGTGAAGAGATTAATATGCCGCAACAAAAA
    GATATTACAACATTAGGCTATGCCATCCAATGTCGTATTACAACAGAAGATCCGTTAAAT
    GATTTCATGCCGGATACTGGAACAATCATTGCTTATCGTTCAAGCGGGGGCTTTGGTGTA
    CGTCTTGATGCTGGAGATGGTTTCCAAGGTGCTGAGATATCACCTTATTATGATTCATTA
    CTCGTAAAATTATCTACACACGCGATATCATTTAAACAAGCAGAAGAAAAAATGGTACGC
    TCATTACGAGAAATGCGTATTCGTGGTGTTAAAACTAATATTCCATTCTTAATTAATGTA
    ATGAAGAATAAAAAGTTCACAAGTGGTGATTACACAACTAAATTTATTGAAGAAACACCA
    GAACTTTTCGACATTCAGCCGTCTCTAGATAGAGGTACTAAAACATTAGAATATATAGGT
    AATGTAACAATTAATGGTTTCCCAAATGTTGAGAAACGTCCGAAACCAGACTATGAATTA
    GCATCAATTCCAACTGTATCTTCAAGTAAAATCGCTTCATTTAGTGGTACGAAACAATTG
    CTTGATGAAGTAGGTCCAAAAGGTGTAGCTGAATGGGTTAAAAAGCAGGATGATGTCTTA
    CTAACAGATACAACCTTTAGAGATGCACACCAATCATTATTAGCTACACGAGTTAGAACT
    AAGGATATGATTAATATCGCATCCAAAACAGCGGACGTATTTAAAGATGGTTTCTCACTA
    GAAATGTGGGGCGGTGCTACATTTGATGTGGCATATAATTTCTTGAAGGAAAACCCATGG
    GAACGACTTGAACGTCTACGTAAAGCTATTCCAAATGTATTATTCCAAATGTTGTTACGT
    GCTTCAAACGCAGTTGGTTATAAAAACTATCCTGATAATGTTATTCATAAATTCGTACAA
    GAAAGTGCTAAAGCAGGCATAGATGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGAT
    CAAATGAAAGTTGCCAATGAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATT
    TGTTATACAGGTGACATTTTAAATCCTGAGCGATCAAACATTTATACTTTAGAGTATTAT
    GTCAAACTAGCTAAAGAGTTAGAACGTGAAGGTTTCCATATTTTAGCGATTAAAGATATG
    GCAGGCTTATTAAAACCTAAAGCCGCTTACGAATTGATTGGTGAGTTAAAATCAGCTGTA
    GATTTACCAATTCATCTTCACACTCATGATACAAGTGGTAATGGTTTATTAACATACAAA
    CAAGCAATAGATGCTGGTGTCGATATCATTGATACTGCTGTTGCTTCAATGAGTGGTTTA
    ACAAGTCAGCCAAGCGCCAATTCGTTATATTATGCATTAAATGGCTTCCCACGCCACCTT
    AGAACTGATATTGAAGGTATGGAGTCACTTAGTCATTATTGGTCAACTGTACGTACTTAT
    TATTCAGACTTTGAAAGTGATATCAAATCACCGAATACTGAAATTTATCAACATGAAATG
    CCTGGTGGACAGTATTCGAATTTAAGTCAACAAGCTAAAAGTTTAGGTTTAGGCGAAAGA
    TTTGATGAAGTCAAAGATATGTATCGCAGAGTGAATTTCTTATTTGGTGATATCGTAAAA
    GTAACACCATCGTCTAAAGTAGTTGGTGATATGGCACTTTATATGGTACAAAATGATCTT
    GATGAACAATCCGTGATTACAGATGGCTATAAATTAGATTTCCCAGAATCAGTAGTGTCG
    TTCTTCAAAGGTGAAATAGGACAACCTGTAAATGGTTTTAATAAAGATTTACAAGCGGTT
    ATTTTAAAAGGCCAAGAAGCACTAACAGCTCGTCCAGGTGAATATCTAGAGCCAGTTGAT
    TTTGAAAAAGTCCGTGAGTTGCTTGAAGAAGAGCAACAAGGTCCTGTTACGGAGCAAGAT
    ATTATTAGTTATGTACTATATCCAAAAGTATATGAACAATATATTCAAACTAGAAATCAA
    TACGGAAACTTATCGTTACTTGATACGCCTACATTCTTCTTTGGAATGCGTAATGGTGAA
    ACAGTAGAAATCGAAATCGATAAAGGTAAACGATTAATTATTAAACTAGAAACGATTAGT
    GAACCAGATGAAAATGGTAATAGAACGATTTACTATGCGATGAATGGTCAAGCGAGACGT
    ATTTACATTAAAGATGAAAATGTGCATACAAATGCGAACGTTAAGCCAAAAGCAGATAAG
    AGTAATCCAAGTCATATCGGTGCTCAAATGCCAGGTTCAGTAACTGAAGTCAAGGTTAGT
    GTAGGTGAAACTGTGAAAGCTAATCAGCCGTTGCTAATTACTGAAGCTATGAAAATGGAA
    ACAACAATTCAAGCACCATTTGACGGTGTGATTAAACAAGTAACTGTAAATAATGGTGAC
    ACAATAGCGACAGGCGATTTATTAATCGAAATTGAAAAAGCAACTGACTAA
    60
    120
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    720
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    840
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    1920
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    2040
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    2160
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    2460
    2520
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    2700
    2760
    2820
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    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3471

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0979 [new locus tag: NWMN_RS05485 ]
  • symbol: PycA
  • description: pyruvate carboxylase
  • length: 1156
  • theoretical pI: 4.95558
  • theoretical MW: 129203
  • GRAVY: -0.319291

⊟Function[edit | edit source]

  • reaction:
    EC 6.4.1.1?  ExPASy
    Pyruvate carboxylase ATP + pyruvate + HCO3(-) = ADP + phosphate + oxaloacetate
  • TIGRFAM:
    Metabolism Energy metabolism Glycolysis/gluconeogenesis pyruvate carboxylase (TIGR01235; EC 6.4.1.1; HMM-score: 1797.3)
    and 28 more
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxylase subunit (TIGR00514; EC 6.3.4.14; HMM-score: 547.7)
    Metabolism Central intermediary metabolism Nitrogen metabolism urea carboxylase (TIGR02712; EC 6.3.4.6; HMM-score: 532.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)
    Metabolism Energy metabolism Other oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 487.6)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Pyrimidine ribonucleotide biosynthesis carbamoyl-phosphate synthase, large subunit (TIGR01369; EC 6.3.5.5; HMM-score: 68.6)
    Metabolism Energy metabolism Pyruvate dehydrogenase dihydrolipoyllysine-residue acetyltransferase (TIGR01348; EC 2.3.1.12; HMM-score: 43.4)
    alpha-L-glutamate ligase, RimK family (TIGR00768; EC 6.3.2.-; HMM-score: 42.8)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan D-alanine--D-alanine ligase (TIGR01205; EC 6.3.2.4; HMM-score: 41.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylglycinamide formyltransferase 2 (TIGR01142; EC 2.1.2.-; HMM-score: 39.3)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylaminoimidazole carboxylase, ATPase subunit (TIGR01161; EC 4.1.1.21; HMM-score: 39.2)
    Metabolism Transport and binding proteins Unknown substrate efflux transporter, RND family, MFP subunit (TIGR01730; HMM-score: 34.3)
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis acetyl-CoA carboxylase, biotin carboxyl carrier protein (TIGR00531; HMM-score: 34)
    homocitrate synthase (TIGR02146; EC 2.3.3.14; HMM-score: 32.3)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)
    Metabolism Central intermediary metabolism Nitrogen fixation homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 32)
    lysine biosynthesis enzyme LysX (TIGR02144; HMM-score: 28.9)
    isopropylmalate/citramalate/homocitrate synthases (TIGR02090; HMM-score: 26.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis phosphoribosylamine--glycine ligase (TIGR00877; EC 6.3.4.13; HMM-score: 25.6)
    Metabolism Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 23.7)
    Metabolism Energy metabolism Other 4-hydroxy-2-oxovalerate aldolase (TIGR03217; EC 4.1.3.39; HMM-score: 23.7)
    Cellular processes Cellular processes Biosynthesis of natural products cyanophycin synthetase (TIGR02068; EC 6.3.2.29,6.3.2.30; HMM-score: 23.2)
    2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase (TIGR02927; EC 2.3.1.61; HMM-score: 22)
    Metabolism Transport and binding proteins Other efflux pump membrane protein (TIGR00998; HMM-score: 18.9)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 15.9)
    Metabolism Amino acid biosynthesis Other pyrrolysine biosynthesis protein PylC (TIGR03909; HMM-score: 15.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion membrane fusion protein, HlyD family (TIGR01843; HMM-score: 13.9)
    Metabolism Transport and binding proteins Other membrane fusion protein cluster 2 protein (TIGR00999; HMM-score: 12.7)
  • TheSEED  :
    • Pyruvate carboxylase (EC 6.4.1.1)
    Carbohydrates Central carbohydrate metabolism Pyruvate metabolism I: anaplerotic reactions, PEP  Pyruvate carboxylase (EC 6.4.1.1)
  • PFAM:
    Post-HMGL (CL0597) PYC_OADA; Conserved carboxylase domain (PF02436; HMM-score: 265.9)
    ATP-grasp (CL0179) CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786; HMM-score: 257.8)
    and 18 more
    NADP_Rossmann (CL0063) Biotin_carb_N; Biotin carboxylase, N-terminal domain (PF00289; HMM-score: 148.6)
    Hybrid (CL0105) Biotin_carb_C; Biotin carboxylase C-terminal domain (PF02785; HMM-score: 112)
    Biotin_lipoyl; Biotin-requiring enzyme (PF00364; HMM-score: 69.3)
    ATP-grasp (CL0179) ATP-grasp; ATP-grasp domain (PF02222; HMM-score: 50.3)
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 39.6)
    TIM_barrel (CL0036) HMGL-like; HMGL-like (PF00682; HMM-score: 39.4)
    ATP-grasp (CL0179) Dala_Dala_lig_C; D-ala D-ala ligase C-terminus (PF07478; HMM-score: 38.9)
    ATP-grasp_3; ATP-grasp domain (PF02655; HMM-score: 30.3)
    Hybrid (CL0105) HlyD_3; HlyD family secretion protein (PF13437; HMM-score: 27.3)
    HlyD_D23; Barrel-sandwich domain of CusB or HlyD membrane-fusion (PF16576; HMM-score: 26.7)
    ATP-grasp (CL0179) RimK; RimK-like ATP-grasp domain (PF08443; HMM-score: 23.9)
    ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 15.6)
    GARS_A; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (PF01071; HMM-score: 15.3)
    Hybrid (CL0105) NQRA_N; NqrA N-terminal barrel-sandwich hybrid domain (PF05896; HMM-score: 13.4)
    GCV_H; Glycine cleavage H-protein (PF01597; HMM-score: 12.8)
    no clan defined PASTA; PASTA domain (PF03793; HMM-score: 12.5)
    TIM_barrel (CL0036) Radical_SAM; Radical SAM superfamily (PF04055; HMM-score: 12.4)
    POTRA (CL0191) YqfD; Putative stage IV sporulation protein YqfD (PF06898; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: biotin
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8215
    • Cytoplasmic Membrane Score: 0.0789
    • Cell wall & surface Score: 0.0023
    • Extracellular Score: 0.0973
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011083
    • TAT(Tat/SPI): 0.00122
    • LIPO(Sec/SPII): 0.001625
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRSVSLLKQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFPNVEKRPKPDYELASIPTVSSSKIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPNTEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRLIIKLETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKATD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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