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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005409000
- symbol?: prfA
- synonym:
- description?: peptide chain release factor 1
- peptide chain release factor 1
- peptide chain release factor 1 (RF-1)
- peptide chain release factor RF1
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5568800..5569876
- synteny block?: BlockID0042050
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2058 (prfA)
08BA02176:
C248_2132 (prfA)
11819-97:
MS7_2134 (prfA)
6850:
RSAU_001956 (prfA)
71193:
ST398NM01_2160
ECT-R 2:
ECTR2_1974 (prfA)
ED133:
SAOV_2159c (prfA)
ED98:
SAAV_2173 (prfA)
HO 5096 0412:
SAEMRSA15_20260 (prfA)
JH1:
SaurJH1_2192 (prfA)
JH9:
SaurJH9_2154 (prfA)
JKD6008:
SAA6008_02156 (prfA)
JKD6159:
SAA6159_02032 (prfA)
LGA251:
SARLGA251_19190 (prfA)
M013:
M013TW_2077
MRSA252:
SAR2206 (prfA)
MSHR1132:
SAMSHR1132_19410
MSSA476:
SAS2021 (prfA)
Mu3:
SAHV_2102 (prfA)
Mu50:
SAV2118 (prfA)
MW2:
MW2042 (prfA)
RF122:
SAB2002c (prfA)
ST398:
SAPIG2160 (prfA)
T0131:
SAT0131_02281 (trpS)
TCH60:
HMPREF0772_11073 (prfA)
TW20:
SATW20_22560 (prfA)
USA300_TCH1516:
USA300HOU_2106 (prfA)
VC40:
SAVC_09465 (prfA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELAD
N315 MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELAD
NCTC8325 MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELAD
Newman MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELAD
USA300_FPR3757 MFDQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELAD
************************************************************
COL IEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGG
N315 IEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGG
NCTC8325 IEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGG
Newman IEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGG
USA300_FPR3757 IEEMLSETDDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGG
************************************************************
COL DEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGA
N315 DEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGA
NCTC8325 DEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGA
Newman DEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGA
USA300_FPR3757 DEAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGA
************************************************************
COL HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS
N315 HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS
NCTC8325 HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS
Newman HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS
USA300_FPR3757 HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS
************************************************************
COL AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDR
N315 AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDR
NCTC8325 AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDR
Newman AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDR
USA300_FPR3757 AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDR
************************************************************
COL SERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELNNGEL
N315 SERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELNNGEL
NCTC8325 SERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELNNGEL
Newman SERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELNNGEL
USA300_FPR3757 SERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELNNGEL
**********************************************************