Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004997000
- symbol?: pmtC
- synonym:
- description?: ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- phenol-soluble modulin export ABC transporter ATP-binding protein PmtC
- PSM ABC-transporter PmtC subunit
- ABC superfamily ATP binding cassette transporter, ABC protein
- ABC transporter family protein
- putative ABC transporter ATP-binding protein
- transport protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5178934..5179806
- synteny block?: BlockID0038780
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1889
08BA02176:
C248_2018
11819-97:
MS7_1966
6850:
RSAU_001826 (pmtC)
71193:
ST398NM01_2052
ECT-R 2:
ECTR2_1803
ED133:
SAOV_2033
ED98:
SAAV_1998
HO 5096 0412:
SAEMRSA15_18470
JH1:
SaurJH1_2021
JH9:
SaurJH9_1988
JKD6008:
SAA6008_01965
JKD6159:
SAA6159_01862
LGA251:
SARLGA251_18150
M013:
M013TW_1968
MRSA252:
SAR2023
MSHR1132:
SAMSHR1132_17750
MSSA476:
SAS1855
Mu3:
SAHV_1916
Mu50:
SAV1931
MW2:
MW1872
RF122:
SAB1867c
ST398:
SAPIG2052
T0131:
SAT0131_02061
TCH60:
HMPREF0772_11210
TW20:
SATW20_19250
USA300_TCH1516:
USA300HOU_1934
VC40:
SAVC_08915
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKLEHITKKYGSNVVLNDIDFDFGDSRIVGLIGKNGVGKTTVMKVMNGNIIKFDGKVDID
N315 MKLEHITKKYGSNVVLNDIDFDFGDSRIVGLIGKNGVGKTTIMKVMNGNIIKFDGKVDID
NCTC8325 MKLEHITKKYGSNVVLNDIDFDFGDSRIVGLIGKNGVGKTTVMKVMNGNIIKFDGKVDID
Newman MKLEHITKKYGSNVVLNDIDFDFGDSRIVGLIGKNGVGKTTVMKVMNGNIIKFDGKVDID
USA300_FPR3757 MKLEHITKKYGSNVVLNDIDFDFGDSRIVGLIGKNGVGKTTVMKVMNGNIIKFDGKVDID
*****************************************:******************
COL NADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKY
N315 NADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKY
NCTC8325 NADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKY
Newman NADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKY
USA300_FPR3757 NADNIGFLIEHPKLYDNKSGLYNLKLFAQVLGKGFDKAYTDKIIDAFGMRPYIKKKVKKY
************************************************************
COL SMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKL
N315 SMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKL
NCTC8325 SMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKL
Newman SMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKL
USA300_FPR3757 SMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLTTIKSLVNELDMRILISSHKL
************************************************************
COL EDIELICDRAVFLRDGHFVQDVNMEEGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDK
N315 EDIELICDRAVFLRDGHFVQDVNMEVGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDK
NCTC8325 EDIELICDRAVFLRDGHFVQDVNMEEGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDK
Newman EDIELICDRAVFLRDGHFVQDVNMEEGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDK
USA300_FPR3757 EDIELICDRAVFLRDGHFVQDVNMEEGVASDTTIVTVDHKDFDRTEKYLAEHFQLQNVDK
************************* **********************************
COL ADGHLMINAQKNYQVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
N315 ADGHLMINAQKNYQVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
NCTC8325 ADGHLMINAQKNYQVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
Newman ADGHLMINAQKNYQVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
USA300_FPR3757 ADGHLMINAQKNYQVILKALSELDIYPKYIETRKSSLRDTYFNINQRGDK
**************************************************