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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004372000
- symbol?: rpsD
- synonym:
- description?: 30S ribosomal protein S4
- strand?: +
- coordinates?: 4612111..4612713
- synteny block?: BlockID0033770
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1678 (rpsD)
08BA02176:
C248_1760 (rpsD)
11819-97:
MS7_1726 (rpsD)
6850:
RSAU_001576 (rpsD)
71193:
ST398NM01_1772
ECT-R 2:
ECTR2_1560 (rpsD)
ED133:
SAOV_1706 (rpsD)
ED98:
SAAV_1730 (rpsD)
HO 5096 0412:
SAEMRSA15_16280 (rpsD)
JH1:
SaurJH1_1810 (rpsD)
JH9:
SaurJH9_1775 (rpsD)
JKD6008:
SAA6008_01688 (rpsD)
JKD6159:
SAA6159_01643 (rpsD)
LGA251:
SARLGA251_16100 (rpsD)
M013:
M013TW_1732
MRSA252:
SAR1797 (rpsD)
MSHR1132:
SAMSHR1132_15690
MSSA476:
SAS1646 (rpsD)
Mu3:
SAHV_1705 (rpsD)
Mu50:
SAV1719 (rpsD)
MW2:
MW1662 (rpsD)
RF122:
SAB1578 (rpsD)
ST398:
SAPIG1772 (rpsD)
T0131:
SAT0131_01823
TCH60:
HMPREF0772_11433 (rpsD)
TW20:
SATW20_17100 (rpsD)
USA300_TCH1516:
USA300HOU_1707 (rpsD)
VC40:
SAVC_07805 (rpsD)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL
N315 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL
NCTC8325 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL
Newman MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL
USA300_FPR3757 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL
************************************************************
COL YGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIL
N315 YGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIL
NCTC8325 YGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIL
Newman YGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIL
USA300_FPR3757 YGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIL
************************************************************
COL VDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLP
N315 VDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLP
NCTC8325 VDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLP
Newman VDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLP
USA300_FPR3757 VDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLP
************************************************************
COL ERSELPAEINEQLIVEYYSR
N315 ERSELPAEINEQLIVEYYSR
NCTC8325 ERSELPAEINEQLIVEYYSR
Newman ERSELPAEINEQLIVEYYSR
USA300_FPR3757 ERSELPAEINEQLIVEYYSR
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