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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004368000
- symbol?: nifZ
- synonym:
- description?: cysteine desulfurase
- cysteine desulfurase
- aminotransferase, class V
- class V aminotransferase
- cysteine desulfurase, putative
- Aminotransferase class V
- aminotransferase class-V family protein
- aminotransferase class-V protein
- iron-sulfur cofactor synthesis protein nifZ
- Selenocysteine lyase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4607847..4608986
- synteny block?: BlockID0033730
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1674 (nifZ)
08BA02176:
C248_1757
11819-97:
MS7_1722
6850:
RSAU_001573
71193:
ST398NM01_1769
ECT-R 2:
ECTR2_1556
ED133:
SAOV_1703
ED98:
SAAV_1726
HO 5096 0412:
SAEMRSA15_16250
JH1:
SaurJH1_1807
JH9:
SaurJH9_1772
JKD6008:
SAA6008_01684
JKD6159:
SAA6159_01640
LGA251:
SARLGA251_16070
M013:
M013TW_1729
MRSA252:
SAR1794
MSHR1132:
SAMSHR1132_15660
MSSA476:
SAS1643
Mu3:
SAHV_1702
Mu50:
SAV1716
MW2:
MW1659
RF122:
SAB1575c
ST398:
SAPIG1769
T0131:
SAT0131_01819
TCH60:
HMPREF0772_11436 (iscS)
TW20:
SATW20_17070
USA300_TCH1516:
USA300HOU_1703 (csd2)
VC40:
SAVC_07790
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---MIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQANQLLQQAKTQINAMIN
N315 ---MIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQANQLLQQAKAQINAMIN
NCTC8325 MFILIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQANQLLQQAKTQINAMIN
Newman ---MIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQANQLLQQAKTQINAMIN
USA300_FPR3757 ---MIYLDNAATTKAFEEVLDTYLKVNQSMYYNPNSPHKAGLQANQLLQQAKTQINAMIN
:************************************************:*******
COL SKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEHPSVLEVVRYLEAHEGFKV
N315 SKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEHPSVLEVVRYLEAHEGFKV
NCTC8325 SKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEHPSVLEVVRYLEAHEGFKV
Newman SKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEHPSVLEVVRYLEAHEGFKV
USA300_FPR3757 SKTNYDVVFTSGATESNNLALKGIAYRKFDTAKEIITSVLEHPSVLEVVRYLEAHEGFKV
************************************************************
COL KYVDVKKDGSINLEHFKELMSDKVGLVTCMYVNNVTGQIQPIPQMAKVIKNYPKAHFHVD
N315 KYVDVKKDGSINLEHFKELVSDKVGLVTCMYVNNVTGQIQPIPQMAKVIKNYPKAHFHVD
NCTC8325 KYVDVKKDGSINLEHFKELMSDKVGLVTCMYVNNVTGQIQPIPQMAKVIKNYPKAHFHVD
Newman KYVDVKKDGSINLEHFKELMSDKVGLVTCMYVNNVTGQIQPIPQMAKVIKNYPKAHFHVD
USA300_FPR3757 KYVDVKKDGSINLEHFKELMSDKVGLVTCMYVNNVTGQIQPIPQMAKVIKNYPKAHFHVD
*******************:****************************************
COL AVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNHIQNVEPTVHGGGQEYGVRSGTV
N315 AVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNHIQNVEPTVHGGGQEYGVRSGTV
NCTC8325 AVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNHIQNVEPTVHGGGQEYGVRSGTV
Newman AVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNHIQNVEPTVHGGGQEYGVRSGTV
USA300_FPR3757 AVQAFGKISMDLNNIDSISLSGHKFNGLKGQGVLLVNHIQNVEPTVHGGGQEYGVRSGTV
************************************************************
COL NLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQFLNKYHGVYINSSTSGSPFVLNISF
N315 NLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQFLNKYHGVYINSSTSGSPFVLNISF
NCTC8325 NLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQFLNKYHGVYINSSTSGSPFVLNISF
Newman NLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQFLNKYHGVYINSSTSGSPFVLNISF
USA300_FPR3757 NLPNDIAMVKAMKIANENFEALNAFVTELNNDVRQFLNKYHGVYINSSTSGSPFVLNISF
************************************************************
COL PGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNEVLAAMGLSDKSIEGSIRLSFGATTTK
N315 PGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNEVLAAMGLSDKSIEGSIRLSFGATTTK
NCTC8325 PGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNEVLAAMGLSDKSIEGSIRLSFGATTTK
Newman PGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNEVLAAMGLSDKSIEGSIRLSFGATTTK
USA300_FPR3757 PGVKGEVLVNAFSKYDIMISTTSACSSKRNKLNEVLAAMGLSDKSIEGSIRLSFGATTTK
************************************************************
COL EDIARFKEIFIIIYEEIKELLK
N315 EDIARFKEIFIIIYEEIKELLK
NCTC8325 EDIARFKEIFIIIYEEIKELLK
Newman EDIARFKEIFIIIYEEIKELLK
USA300_FPR3757 EDIARFKEIFIIIYEEIKELLK
**********************