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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004165000
- symbol?: hrcA
- synonym:
- description?: heat-inducible transcription repressor HrcA
- heat-inducible transcription repressor HrcA
- HrcA family transcriptional regulator
- heat-inducible transcriptional repressor
- heat-inducible transcription repressor
- heat shock transcriptional repressor HrcA
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4431024..4432001
- synteny block?: BlockID0031950
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1540 (hrcA)
08BA02176:
C248_1625 (hrcA)
11819-97:
MS7_1599 (hrcA)
6850:
RSAU_001447 (hrcA)
71193:
ST398NM01_1648
ECT-R 2:
ECTR2_1432 (hrcA)
ED133:
SAOV_1582 (hrcA)
ED98:
SAAV_1574 (hrcA)
HO 5096 0412:
SAEMRSA15_15020 (hrcA)
JH1:
SaurJH1_1674
JH9:
SaurJH9_1640
JKD6008:
SAA6008_01552 (hrcA)
JKD6159:
SAA6159_01517 (hrcA)
LGA251:
SARLGA251_14880 (hrcA)
M013:
M013TW_1597
MRSA252:
SAR1659 (hrcA)
MSHR1132:
SAMSHR1132_14220
MSSA476:
SAS1520
Mu3:
SAHV_1569 (hrcA)
Mu50:
SAV1582 (hrcA)
MW2:
MW1534 (hrcA)
RF122:
SAB1454c (hrcA)
ST398:
SAPIG1648 (hrcA)
T0131:
SAT0131_01678
TCH60:
HMPREF0772_11558 (hrcA)
TW20:
SATW20_15780 (hrcA)
USA300_TCH1516:
USA300HOU_1583 (hrcA)
VC40:
SAVC_07165
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
N315 MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
NCTC8325 MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
Newman MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
USA300_FPR3757 MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
************************************************************
COL SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
N315 SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
NCTC8325 SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
Newman SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
USA300_FPR3757 SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
************************************************************
COL YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
N315 YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISN
NCTC8325 YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
Newman YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
USA300_FPR3757 YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
**************************************************.*********
COL FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
N315 FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDAL
NCTC8325 FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
Newman FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
USA300_FPR3757 FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
*********************************:**************************
COL NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
N315 NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
NCTC8325 NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
Newman NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
USA300_FPR3757 NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
************************************************************
COL KGQIAVIGPTAMHYQNVIQLLNRIW
N315 KGQIAVIGPTAMHYQNVIQLLNRIW
NCTC8325 KGQIAVIGPTAMHYQNVIQLLNRIW
Newman KGQIAVIGPTAMHYQNVIQLLNRIW
USA300_FPR3757 KGQIAVIGPTAMHYQNVIQLLNRIW
*************************