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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004143000
- symbol?: dnaG
- synonym:
- description?: DNA primase
- strand?: -
- coordinates?: 4411501..4413320
- synteny block?: BlockID0031730
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1520 (dnaG)
08BA02176:
C248_1605 (dnaG)
11819-97:
MS7_1579 (dnaG)
6850:
RSAU_001427 (dnaG)
71193:
ST398NM01_1627
ECT-R 2:
ECTR2_1412 (dnaG)
ED133:
SAOV_1562
ED98:
SAAV_1554 (dnaG)
HO 5096 0412:
SAEMRSA15_14820 (dnaG)
JH1:
SaurJH1_1654
JH9:
SaurJH9_1620
JKD6008:
SAA6008_01531 (dnaG)
JKD6159:
SAA6159_01497 (dnaG)
LGA251:
SARLGA251_14680 (dnaG)
M013:
M013TW_1577
MRSA252:
SAR1639 (dnaG)
MSHR1132:
SAMSHR1132_14020
MSSA476:
SAS1500
Mu3:
SAHV_1549 (dnaG)
Mu50:
SAV1562 (dnaG)
MW2:
MW1514 (dnaG)
RF122:
SAB1434c (dnaG)
ST398:
SAPIG1627
T0131:
SAT0131_01657
TCH60:
HMPREF0772_11578 (dnaG)
TW20:
SATW20_15580 (dnaG)
USA300_TCH1516:
USA300HOU_1564 (dnaG)
VC40:
SAVC_07060
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
N315 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
NCTC8325 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
Newman MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
USA300_FPR3757 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF
************************************************************
COL GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
N315 GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
NCTC8325 GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
Newman GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
USA300_FPR3757 GCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHE
************************************************************
COL LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
N315 LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
NCTC8325 LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
Newman LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
USA300_FPR3757 LIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIE
************************************************************
COL LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
N315 LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
NCTC8325 LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
Newman LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
USA300_FPR3757 LAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIF
************************************************************
COL QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
N315 QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
NCTC8325 QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
Newman QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
USA300_FPR3757 QKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRK
************************************************************
COL LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
N315 LTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFV
NCTC8325 LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
Newman LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
USA300_FPR3757 LTSNITLMFDGDFAGSEATLKTGQNLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFV
************************:********************************:**
COL KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
N315 KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVS
NCTC8325 KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
Newman KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
USA300_FPR3757 KNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKALNDVAPFFNVS
*************************************************:**********
COL PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
N315 PEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
NCTC8325 PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
Newman PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
USA300_FPR3757 PEQLANEIQFNQAPANYYPE------DEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHL
******************** **********************************
COL MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
N315 MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
NCTC8325 MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
Newman MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
USA300_FPR3757 MRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLI
************************************************************
COL SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
N315 SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
NCTC8325 SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
Newman SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
USA300_FPR3757 SLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAK
************************************************************
COL NKERM
N315 NKERM
NCTC8325 NKERM
Newman NKERM
USA300_FPR3757 NKERM
*****