⊟Summary[edit | edit source]

pan ID^?: SAUPAN003937000
symbol^?: rpsA
synonym:
description^?: 30S ribosomal protein S1
- 30S ribosomal protein S1
- 30S ribosomalprotein S1p
- putative 30S ribosomal protein S1
- putative 30S ribosomal protein S1 homolog
strand^?: -
coordinates^?: 4255467..4256642
synteny block^?: BlockID0029830
occurrence^?: in 100% of 34 strains

rpsA : 30S ribosomal protein S1 ^[1]

Staphylococcal 30S ribosomal protein S1 is a non-essential component of the mature bacterial ribosome. It recognizes mRNA and helps orient the ribosome to the initiation point but only becomes important when the mRNA has a short, purine-rich Shine-Delgarno sequence. Staphylococcal 30S ribosomal protein S1 is also known as "bS1" by the universal ribosomal protein nomenclature harmonization system. ^[2]

⊟Orthologs[edit | edit source]

COL:

SACOL1516 (rpsA)

N315:

SA1308 (rpsA)

NCTC8325:

SAOUHSC_01493 (rpsA)

Newman:

NWMN_1385 (rpsA)

USA300_FPR3757:

SAUSA300_1365 (rpsA)

04-02981:

SA2981_1432

08BA02176:

C248_1515

11819-97:

MS7_1430 (rpsA)

6850:

RSAU_001347 (rpsA)

71193:

ST398NM01_1474

ECT-R 2:

ECTR2_1328

ED133:

SAOV_1482 (rpsA)

ED98:

SAAV_1463 (rpsA)

HO 5096 0412:

SAEMRSA15_13360

JH1:

SaurJH1_1563 (rpsA)

JH9:

SaurJH9_1533 (rpsA)

JKD6008:

SAA6008_01444 (rpsA)

JKD6159:

SAA6159_01340 (rpsA)

JSNZ:

JSNZ_001460 (rpsA)

LGA251:

SARLGA251_13880

M013:

M013TW_1423

MRSA252:

SAR1485 (rpsA)

MSHR1132:

SAMSHR1132_13150

MSSA476:

SAS1417 (rpsA)

Mu3:

SAHV_1464 (rpsA)

Mu50:

SAV1476 (rpsA)

MW2:

MW1365 (rpsA)

RF122:

SAB1338c (rpsA)

ST398:

SAPIG1474

T0131:

SAT0131_01564 (hsdM)

TCH60:

HMPREF0772_11730 (rpsA)

TW20:

SATW20_14730

USA300_TCH1516:

USA300HOU_1413 (rpsA)

VC40:

SAVC_06630 (rpsA)

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEV
N315            MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEV
NCTC8325        MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEV
Newman          MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEV
USA300_FPR3757  MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEV
                ************************************************************

COL             VKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVK
N315            VKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVK
NCTC8325        VKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVK
Newman          VKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVK
USA300_FPR3757  VKEGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVK
                ************************************************************

COL             GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEEN
N315            GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEEN
NCTC8325        GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEEN
Newman          GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEEN
USA300_FPR3757  GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEEN
                ************************************************************

COL             DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIG
N315            DAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIG
NCTC8325        DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIG
Newman          DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIG
USA300_FPR3757  DAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIG
                *****************.******************************************

COL             QDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAP
N315            QDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAP
NCTC8325        QDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAP
Newman          QDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAP
USA300_FPR3757  QDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAP
                ************************************************************

COL             GVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESD
N315            GVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESD
NCTC8325        GVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESD
Newman          GVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESD
USA300_FPR3757  GVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESD
                ************************************************************

COL             PSTTKAYLENEEEDNPTIGDMIGDKLKNLKL
N315            PSTTKAYLENEEEDNPTIGDMIGDKLKNLKL
NCTC8325        PSTTKAYLENEEEDNPTIGDMIGDKLKNLKL
Newman          PSTTKAYLENEEEDNPTIGDMIGDKLKNLKL
USA300_FPR3757  PSTTKAYLENEEEDNPTIGDMIGDKLKNLKL
                *******************************

↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p)Andrey V Machulin, Evgeniya I Deryusheva, Oxana V Galzitskaya
Variation in base composition, structure-function relationships, and origins of structural repetition in bacterial rpsA gene.
Biosystems: 2024, 238;105196
[PubMed:38537772] [WorldCat.org] [DOI] (I p)
↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)

[1] Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p)Andrey V Machulin, Evgeniya I Deryusheva, Oxana V Galzitskaya
Variation in base composition, structure-function relationships, and origins of structural repetition in bacterial rpsA gene.
Biosystems: 2024, 238;105196
[PubMed:38537772] [WorldCat.org] [DOI] (I p)

[2] Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)

[1]

[2]

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Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]