PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003817000
• symbol^?: cspA
• synonym:
• description^?: cold-shock protein CspA

  descriptions from strain specific annotations:

  • cold-shock protein CspA
  • cold shock protein
  • CSD family cold shock protein
  • major cold-shock protein CspA
  • cold-shock DNA-binding domain-containing protein
  • cold shock protein, CSD family
  • cold shock protein cspD
  • DNA-binding cold-shock protein
  • major cold shock protein
  • putative cold-shock DNA-binding domain protein
• strand^?: -
• coordinates^?: 4108598..4108798
• synteny block^?: BlockID0028740
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1437
N315:
SA1234 (cspA)
NCTC8325:
SAOUHSC_01403
Newman:
NWMN_1313 (cspA)
USA300_FPR3757:
SAUSA300_1295
04-02981:
SA2981_1356 (cspA)
08BA02176:
C248_1442 (cspA)
11819-97:
MS7_1358
6850:
RSAU_001282 (cspA)
71193:
ST398NM01_1404
ECT-R 2:
ECTR2_1259
ED133:
SAOV_1412c (cspA)
ED98:
SAAV_1386
HO 5096 0412:
SAEMRSA15_12650 (cspA)
JH1:
SaurJH1_1492
JH9:
SaurJH9_1463
JKD6008:
SAA6008_01366 (cspA)
JKD6159:
SAA6159_01269 (cspA)
LGA251:
SARLGA251_13190 (cspA)
M013:
M013TW_1347
MRSA252:
SAR1414 (cspA)
MSHR1132:
SAMSHR1132_12430
MSSA476:
SAS1343
Mu3:
SAHV_1390 (cspA)
Mu50:
SAV1402 (cspA)
MW2:
MW1290 (cspA)
RF122:
SAB1258c (cspA)
ST398:
SAPIG1404
T0131:
SAT0131_01477
TCH60:
HMPREF0772_11807 (cspA)
TW20:
SATW20_14010 (cspA)
USA300_TCH1516:
USA300HOU_1337 (cspA)
VC40:
SAVC_06255 (cspA)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
  N315            MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
  NCTC8325        MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
  Newman          MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
  USA300_FPR3757  MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
                  ************************************************************
  
  COL             ANVVKL
  N315            ANVVKL
  NCTC8325        ANVVKL
  Newman          ANVVKL
  USA300_FPR3757  ANVVKL
                  ******