PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003768000
• symbol^?: trpA
• synonym:
• description^?: tryptophan synthase subunit alpha

  descriptions from strain specific annotations:

  • tryptophan synthase subunit alpha
  • tryptophan synthase, alpha subunit
  • Tryptophan synthase alpha chain
• strand^?: +
• coordinates^?: 4065334..4066119
• synteny block^?: BlockID0028300
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1409 (trpA)
N315:
SA1205 (trpA)
NCTC8325:
SAOUHSC_01372 (trpA)
Newman:
NWMN_1285 (trpA)
USA300_FPR3757:
SAUSA300_1268 (trpA)
04-02981:
SA2981_1327 (trpA)
08BA02176:
C248_1411 (trpA)
11819-97:
MS7_1330 (trpA)
6850:
RSAU_001254 (trpA)
71193:
ST398NM01_1374
ECT-R 2:
ECTR2_1230 (trpA)
ED133:
SAOV_1383
ED98:
SAAV_1355 (trpA)
HO 5096 0412:
SAEMRSA15_12210 (trpA)
JH1:
SaurJH1_1463 (trpA)
JH9:
SaurJH9_1434 (trpA)
JKD6008:
SAA6008_01338 (trpA)
JKD6159:
SAA6159_01240 (trpA)
LGA251:
SARLGA251_12820 (trpA)
M013:
M013TW_1319
MRSA252:
SAR1386 (trpA)
MSHR1132:
SAMSHR1132_12160
MSSA476:
SAS1313 (trpA)
Mu3:
SAHV_1361 (trpA)
Mu50:
SAV1373 (trpA)
MW2:
MW1260 (trpA)
RF122:
SAB1228 (trpA)
ST398:
SAPIG1374 (trpA)
T0131:
SAT0131_01445 (hlgC)
TCH60:
HMPREF0772_11834 (trpA)
TW20:
SATW20_13730 (trpA)
USA300_TCH1516:
USA300HOU_1308 (trpA)
VC40:
SAVC_06115 (trpA)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITI
  N315            MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITI
  NCTC8325        MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITI
  Newman          MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITI
  USA300_FPR3757  MTKLFIPYIMGNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITI
                  ************************************************************
  
  COL             DYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRL
  N315            DYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRL
  NCTC8325        DYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRL
  Newman          DYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRL
  USA300_FPR3757  DYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRL
                  ************************************************************
  
  COL             KQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIES
  N315            KQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIES
  NCTC8325        KQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIES
  Newman          KQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIES
  USA300_FPR3757  KQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIES
                  ************************************************************
  
  COL             IKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIKYLQSIQQTL
  N315            IKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTL
  NCTC8325        IKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIKYLQSIQQTL
  Newman          IKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIKYLQSIQQTL
  USA300_FPR3757  IKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIKYLQSIQQTL
                  **************************************************:*********
  
  COL             NN
  N315            NN
  NCTC8325        NN
  Newman          NN
  USA300_FPR3757  NN
                  **