PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003584000
• symbol^?: rodZ
• synonym:
• description^?: transcriptional regulator

  descriptions from strain specific annotations:

  • transcriptional regulator
  • helix-turn-helix domain-containing protein
  • transcriptional regulator, putative
  • transcriptional regulator Cro/CI family protein
  • Cro/CI family transcriptional regulator
  • DNA-binding protein
  • Helix-turn-helix domain protein
  • putative DNA-binding protein
• strand^?: +
• coordinates^?: 3924036..3924428
• synteny block^?: BlockID0026610
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1301
N315:
SA1125
NCTC8325:
SAOUHSC_01259
Newman:
NWMN_1191
USA300_FPR3757:
SAUSA300_1175
04-02981:
SA2981_1240
08BA02176:
C248_1315
11819-97:
MS7_1240
6850:
RSAU_001165
71193:
ST398NM01_1284
ECT-R 2:
ECTR2_1138
ED133:
SAOV_1284
ED98:
SAAV_1257
HO 5096 0412:
SAEMRSA15_11150
JH1:
SaurJH1_1368
JH9:
SaurJH9_1342
JKD6008:
SAA6008_01237
JKD6159:
SAA6159_01137
LGA251:
SARLGA251_11930
M013:
M013TW_1224
MRSA252:
SAR1258
MSHR1132:
SAMSHR1132_11250
MSSA476:
SAS1216
Mu3:
SAHV_1272
Mu50:
SAV1282
MW2:
MW1165
RF122:
SAB1144
ST398:
SAPIG1284
T0131:
SAT0131_01338 (galM)
TCH60:
HMPREF0772_11946
TW20:
SATW20_12760
USA300_TCH1516:
USA300HOU_1214
VC40:
SAVC_05575

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASV
  N315            MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASV
  NCTC8325        MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASV
  Newman          MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASV
  USA300_FPR3757  MKTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASV
                  ************************************************************
  
  COL             VNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITL
  N315            VNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITL
  NCTC8325        VNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITL
  Newman          VNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITL
  USA300_FPR3757  VNIEPNQLIQAHQDEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITL
                  ************************************************************
  
  COL             LLWIMLVLIF
  N315            LLWIMLVLIF
  NCTC8325        LLWIMLVLIF
  Newman          LLWIMLVLIF
  USA300_FPR3757  LLWIMLVLIF
                  **********