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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003576000
- symbol?: rnjB
- synonym:
- description?: ribonuclease J 2
- ribonuclease J 2
- RNA-metabolising metallo-beta-lactamase
- metallo-beta-lactamase
- metallo-beta-lactamase family protein-like protein
- ribonuclease J
- beta-lactamase domain-containing protein
- Beta-lactamase domain protein
- metallo-beta-lactamase family protein
- metallo-beta-lactamase superfamily protein
- putative Zn-dependent hydrolase
- Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3914688..3916424
- synteny block?: BlockID0026530
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1233
08BA02176:
C248_1308
11819-97:
MS7_1233 (rnjB)
6850:
RSAU_001158
71193:
ST398NM01_1277
ECT-R 2:
ECTR2_1131
ED133:
SAOV_1277
ED98:
SAAV_1250
HO 5096 0412:
SAEMRSA15_11080
JH1:
SaurJH1_1361
JH9:
SaurJH9_1335
JKD6008:
SAA6008_01230
JKD6159:
SAA6159_01130
LGA251:
SARLGA251_11860
M013:
M013TW_1215
MRSA252:
SAR1251
MSHR1132:
SAMSHR1132_11180
MSSA476:
SAS1209
Mu3:
SAHV_1265
Mu50:
SAV1275
MW2:
MW1158
RF122:
SAB1137
ST398:
SAPIG1277
T0131:
SAT0131_01330
TCH60:
HMPREF0772_11954
TW20:
SATW20_12690
USA300_TCH1516:
USA300HOU_1207
VC40:
SAVC_05540
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---------------------------------------------------MFMLDAGLM
N315 -----------------MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLM
NCTC8325 ---------------------------------------------------MFMLDAGLM
Newman -----------------MSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLM
USA300_FPR3757 MNSEFIYGRVTNLGGKILSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLM
*********
COL FPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTI
N315 FPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTI
NCTC8325 FPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTI
Newman FPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTI
USA300_FPR3757 FPEDEMLGIDIVIPDISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQLDAPVYGSKLTI
************************************************************
COL ALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVY
N315 ALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVY
NCTC8325 ALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVY
Newman ALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVY
USA300_FPR3757 ALIKENMKARNIDKKVRYYTVNNDSIMRFKNVNISFFNTTHSIPDSLGVCIHTSYGAIVY
************************************************************
COL TGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFA
N315 TGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFA
NCTC8325 TGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFA
Newman TGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFA
USA300_FPR3757 TGEFKFDQSLHGHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFA
************************************************************
COL KVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLI
N315 KVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLI
NCTC8325 KVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLI
Newman KVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLI
USA300_FPR3757 KVRGRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLI
************************************************************
COL PITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVI
N315 PITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVI
NCTC8325 PITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVI
Newman PITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVI
USA300_FPR3757 PITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEVI
************************************************************
COL IANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAK
N315 IANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAK
NCTC8325 IANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAK
Newman IANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAK
USA300_FPR3757 IANTLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAK
************************************************************
COL LAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLL
N315 LAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLL
NCTC8325 LAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLL
Newman LAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLL
USA300_FPR3757 LAAEAGVAPEKIFLVEKGDVINYNGKDMILNEKVNSGNILIDGIGIGDVGNIVLRDRHLL
************************************************************
COL AEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRI
N315 AEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRI
NCTC8325 AEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRI
Newman AEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRI
USA300_FPR3757 AEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEDLLREAEEKVREIVEAGLQEKRI
************************************************************
COL EWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
N315 EWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
NCTC8325 EWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
Newman EWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
USA300_FPR3757 EWSEIKQNMRDQISKLLFESTKRRPMIIPVISEI
**********************************