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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003566000
- symbol?: rimP
- synonym:
- description?: ribosome maturation factor
- ribosome maturation factor
- ribosome maturation factor RimP
- clustered with transcription termination protein NusA
- protein LMOf2365_1338
- ribosome maturation protein RimP
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3904324..3904812
- synteny block?: BlockID0026430
- occurrence?: in 100% of 34 strains
rimP : ribosome maturation factor P [1]
• A crystal structure is available : 8BH7
Ribosome maturation factor P binds late during 30S ribosome biogenesis. It holds the unstable 16S rRNA central pseudoknot in the proper confirmation until recruitment of pseudoknot-stabilizing ribosomal proteins S5 and S12.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1223
08BA02176:
C248_1298
11819-97:
MS7_1223 (rimP)
6850:
RSAU_001147 (rimP)
71193:
ST398NM01_1267
ECT-R 2:
ECTR2_1121
ED133:
SAOV_1267
ED98:
SAAV_1240
HO 5096 0412:
SAEMRSA15_10980
JH1:
SaurJH1_1351
JH9:
SaurJH9_1325
JKD6008:
SAA6008_01220
JKD6159:
SAA6159_01120
JSNZ:
JSNZ_001237 (rimP)
LGA251:
SARLGA251_11760
M013:
M013TW_1205
MRSA252:
SAR1241
MSHR1132:
SAMSHR1132_11080
MSSA476:
SAS1199
Mu3:
SAHV_1255
Mu50:
SAV1265
MW2:
MW1148
RF122:
SAB1127
ST398:
SAPIG1267
T0131:
SAT0131_01318
TCH60:
HMPREF0772_11964
TW20:
SATW20_12590
USA300_TCH1516:
USA300HOU_1197
VC40:
SAVC_05490
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
N315 MSKITEQVEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
NCTC8325 MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
Newman MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
USA300_FPR3757 MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
************:***********************************************
COL EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
N315 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
NCTC8325 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
Newman EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
USA300_FPR3757 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
************************************************************
COL VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
N315 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
NCTC8325 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
Newman VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
USA300_FPR3757 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
***********************************
- ↑ Nataliia Garaeva, Bulat Fatkhullin, Fadis Murzakhanov, Marat Gafurov, Alexander Golubev, Aydar Bikmullin, Maxim Glazyrin, Bruno Kieffer, Lasse Jenner, Vladimir Klochkov, Albert Aganov, Andrey Rogachev, Oleksandr Ivankov, Shamil Validov, Marat Yusupov, Konstantin Usachev
Structural aspects of RimP binding on small ribosomal subunit from Staphylococcus aureus.
Structure: 2024, 32(1);74-82.e5
[PubMed:38000368] [WorldCat.org] [DOI] (I p)