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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003566000
- symbol?: rimP
- synonym:
- description?: ribosome maturation factor
- ribosome maturation factor
- ribosome maturation factor RimP
- clustered with transcription termination protein NusA
- protein LMOf2365_1338
- ribosome maturation protein RimP
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3904324..3904812
- synteny block?: BlockID0026430
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1223
08BA02176:
C248_1298
11819-97:
MS7_1223 (rimP)
6850:
RSAU_001147 (rimP)
71193:
ST398NM01_1267
ECT-R 2:
ECTR2_1121
ED133:
SAOV_1267
ED98:
SAAV_1240
HO 5096 0412:
SAEMRSA15_10980
JH1:
SaurJH1_1351
JH9:
SaurJH9_1325
JKD6008:
SAA6008_01220
JKD6159:
SAA6159_01120
LGA251:
SARLGA251_11760
M013:
M013TW_1205
MRSA252:
SAR1241
MSHR1132:
SAMSHR1132_11080
MSSA476:
SAS1199
Mu3:
SAHV_1255
Mu50:
SAV1265
MW2:
MW1148
RF122:
SAB1127
ST398:
SAPIG1267
T0131:
SAT0131_01318
TCH60:
HMPREF0772_11964
TW20:
SATW20_12590
USA300_TCH1516:
USA300HOU_1197
VC40:
SAVC_05490
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
N315 MSKITEQVEVIVQPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
NCTC8325 MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
Newman MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
USA300_FPR3757 MSKITEQVEVIVKPIMEDLNFELVDVEYVKEGRDHFLRISIDKEGGVDLNDCTLASEKIS
************:***********************************************
COL EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
N315 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
NCTC8325 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
Newman EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
USA300_FPR3757 EAMDANDPIPEMYYLDVASPGAERPIKKEQDFQNAITKPVFVSLYVPIEGEKEWLGILQE
************************************************************
COL VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
N315 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
NCTC8325 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
Newman VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
USA300_FPR3757 VNNETIVVQVKIKARTKDIEIPRDKIAKARHAVMI
***********************************