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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005685000
- symbol?: rpsE
- synonym:
- description?: 30S ribosomal protein S5
- 30S ribosomal protein S5
- ribosomal protein S5
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5802821..5803321
- synteny block?: BlockID0044310
- occurrence?: in 100% of 34 strains
rpsE : 30S ribosomal protein S5 [1]
• two crystal structures are available : 6YEF , 8BH6
Staphylococcal 30S ribosomal protein S5 is also known as "uS5" by the universal ribosomal protein nomenclature harmonization system. [2]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2171 (rpsE)
08BA02176:
C248_2269 (rpsE)
11819-97:
MS7_2253 (rpsE)
6850:
RSAU_002069 (rpsE)
71193:
ST398NM01_2286
ECT-R 2:
ECTR2_2095 (rpsE)
ED133:
SAOV_2270c
ED98:
SAAV_2295 (rpsE)
HO 5096 0412:
SAEMRSA15_21320 (rpsE)
JH1:
SaurJH1_2301 (rpsE)
JH9:
SaurJH9_2260 (rpsE)
JKD6008:
SAA6008_02270 (rpsE)
JKD6159:
SAA6159_02140 (rpsE)
JSNZ:
JSNZ_002197 (rpsE)
LGA251:
SARLGA251_20190 (rpsE)
M013:
M013TW_2193
MRSA252:
SAR2318 (rpsE)
MSHR1132:
SAMSHR1132_20590
MSSA476:
SAS2124 (rpsE)
Mu3:
SAHV_2217 (rpsE)
Mu50:
SAV2233 (rpsE)
MW2:
MW2152 (rpsE)
RF122:
SAB2105c (rpsE)
ST398:
SAPIG2286 (rpsE)
T0131:
SAT0131_02406 (def)
TCH60:
HMPREF0772_10965 (rpsE)
TW20:
SATW20_23670 (rpsE)
USA300_TCH1516:
USA300HOU_2224 (rpsE)
VC40:
SAVC_10035 (rpsE)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI
N315 MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI
NCTC8325 MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI
Newman MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI
USA300_FPR3757 MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI
************************************************************
COL KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI
N315 KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI
NCTC8325 KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI
Newman KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI
USA300_FPR3757 KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI
************************************************************
COL TDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN
N315 TDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN
NCTC8325 TDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN
Newman TDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEE---
USA300_FPR3757 TDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN
*******************************************
- ↑ Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p) - ↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)